Contig 008225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022J01Sequence359006329 (3)ref|XP_004242662.1|2e-34PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu664008225 (2)ref|XP_006360251.1|3e-83PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan
JMFF022O03Sequence543006329 (3)ref|XP_004242662.1|1e-72PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu689008225 (2)ref|XP_006360251.1|6e-47PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF022J01+ GGGGAGGAGCTCCTTGCTTGGGCTTTGCACCCAAGATCTACTGTCAACTTGCCTTCC
                      ____________________________________________________________
consensus GGGGAGGAGCTCCTTGCTTGGGCTTTGCACCCAAGATCTACTGTCAACTTGCCTTCC
 
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rJMFF022J01+ TCAACCAGGACAGTGAGAGCACTGGTTGAAGTGGAAGCCTTTGCATTGAGAGCTGAAGAT
                      ____________________________________________________________
consensus TCAACCAGGACAGTGAGAGCACTGGTTGAAGTGGAAGCCTTTGCATTGAGAGCTGAAGAT
 
. : . : . : . : . : . :
rJMFF022J01+ CTCAAGTTCGTTGCTAACCAGTTTAGGCGACTCCACAGCAAGAAGCTGCAGCATACATTC
rJMFF022O03+ TCCACAGCAAGAAGCTGCAGCATACATTC
                      ____________________________________________________________
consensus CTCAAGTTCGTTGCTAACCAGTTTAGGCGACTCCACAGCAAGAAGCTGCAGCATACATTC
 
. : . : . : . : . : . :
rJMFF022J01+ CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
rJMFF022O03+ CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
                      ____________________________________________________________
consensus CGGTTCTACTCTCACCATTGGAGAACATGGGCAGCGTGCTTCATACAGGCCGCTTGGCGA
 
. : . : . : . : . : . :
rJMFF022J01+ CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
rJMFF022O03+ CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
                      ____________________________________________________________
consensus CGACACAAGCGAAGAATGATGGCAAAAGATCTTGCTAGGATGGAATCCTTTGCTTTAAAT
 
. : . : . : . : . : . :
rJMFF022J01+ GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
rJMFF022O03+ GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
                      ____________________________________________________________
consensus GAAAGAACGGAAGAGAGTGAGCGAGGAGGCGAGGAACAGGAGGAGGAGGATACTAGTACT
 
. : . : . : . : . : . :
rJMFF022J01+ TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
rJMFF022O03+ TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
                      ____________________________________________________________
consensus TCTCCCACCTCAAACCAGTCCCTGACAAAGTTAAATCTCGGTGTCACGATATTGGCTTCA
 
. : . : . : . : . : . :
rJMFF022J01+ AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
rJMFF022O03+ AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
                      ____________________________________________________________
consensus AGATTTGCTGCAAACACTAGGAGAGGAGCTCAGAAGATCAAAGATGTCGGTTTGCCTAAA
 
. : . : . : . : . : . :
rJMFF022J01+ CTACAAAAACCCGAAGAGCCTGACTTTTCAGCAGAGGCGGATGACGACTAGCAACTGTTG
rJMFF022O03+ CTACAAAAACCCGAAGAGCCTGACTTTTCAACAGAGGCGGATGACGACTAGCAACTGTTG
                      ____________________________________________________________
consensus CTACAAAAACCCGAAGAGCCTGACTTTTCAGCAGAGGCGGATGACGACTAGCAACTGTTG
 
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rJMFF022J01+ GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
rJMFF022O03+ GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
                      ____________________________________________________________
consensus GTTTCAGTAGCAAAGGCTAACTTTTTATGTGATGCATTCTGGTAATATGAATGATAATTT
 
. : . : . : . : . : . :
rJMFF022J01+ CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
rJMFF022O03+ CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
                      ____________________________________________________________
consensus CATAGTTTTGAGCAAACATGTATCAACAAGAAGTTGTGTAAATGAGAAACAAGAAAGTGG
 
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rJMFF022J01+ GGGAATG
rJMFF022O03+ GGGAATGGAGATTTTTCTGCAAACTGAAACATCATGATGATGATGATAATTCCTTCTATA
                      ____________________________________________________________
consensus GGGAATGGAGATTTTTCTGCAAACTGAAACATCATGATGATGATGATAATTCCTTCTATA
 
. : . : . : . : . : . :
rJMFF022O03+ ATGTTAATGTTGAAGAGACGACNCCTGTATCCTGTAACAGCTCTGTTAAATTATCTACAA
                      ____________________________________________________________
consensus ATGTTAATGTTGAAGAGACGACNCCTGTATCCTGTAACAGCTCTGTTAAATTATCTACAA
 
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rJMFF022O03+ AGTATTCAACAAAGTTGTTGAGAGCATGTAAGTTATGGGACTTGGATATTCTCACTTTCT
                      ____________________________________________________________
consensus AGTATTCAACAAAGTTGTTGAGAGCATGTAAGTTATGGGACTTGGATATTCTCACTTTCT