| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006O01 | Sequence | 531 | 001579 (7) | ref|NP_001234581.1| | 2e-52 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 620 | 008213 (8) | ref|XP_002268058.1| | 4e-07 | PREDICTED: transcription factor TCP7 [Vitis vinifera] |
| JMFF010K11 | Sequence | 581 | 001579 (7) | ref|NP_001234581.1| | 1e-58 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 691 | 008213 (8) | ref|XP_009789878.1| | 1e-16 | PREDICTED: transcription factor TCP7-like [Nicotiana sylvestris] |
| JMFF019P20 | Sequence | 503 | 001579 (7) | ref|NP_001234581.1| | 1e-52 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 643 | 008213 (8) | ref|XP_002268058.1| | 2e-05 | PREDICTED: transcription factor TCP7 [Vitis vinifera] |
| JMFF023F04 | Sequence | 523 | 001579 (7) | ref|NP_001234581.1| | 2e-52 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 682 | 008213 (8) | ref|NP_001233810.1| | 5e-10 | TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript |
| JMFF027J21 | Sequence | 534 | 001579 (7) | ref|NP_001234581.1| | 3e-53 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 606 | 008213 (8) | ref|NP_001233810.1| | 3e-10 | TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript |
| JMFF032M17 | Sequence | 526 | 001579 (7) | ref|XP_009588219.1| | 2e-52 | PREDICTED: transcription factor TCP7-like [Nicotiana tomentosiformis] | 727 | 008213 (8) | ref|XP_009789878.1| | 9e-23 | PREDICTED: transcription factor TCP7-like [Nicotiana sylvestris] |
| JMFF041F11 | Sequence | 646 | 001579 (7) | ref|NP_001234581.1| | 9e-66 | TCP transcription factor 14 [Solanum lycopersicum] gb|ADM87263.1| TCP transcript | 620 | 008213 (8) | ref|NP_001233810.1| | 9e-12 | TCP transcription factor 15 [Solanum lycopersicum] gb|ADM87264.1| TCP transcript |
| JMFN034K03 | Sequence | 548 | 008213 (8) | ||||||||
This contig is upended
. : . : . : . : . : . :
rJMFF032M17+ GATTTTGGGCTATCCCTCCCAGNCCGGACTTCGGCCAGGTGTGG
rJMFF010K11+ AGGTGTGG
____________________________________________________________
consensus GATTTTGGGCTATCCCTCCCAGNCCGGACTTCGGCCAGGTGTGG
. : . : . : . : . : . :
rJMFF041F11+ ACACCCGCATTGAATTCCCACCCT
rJMFF032M17+ AGCTTTGCGGCGGCTCCTCATGAGATGGTGGTACCCACACCCGCATTGAATTCCCACCCT
rJMFF027J21+ ACCCT
rJMFF010K11+ AGCTTTGCGGCGGCTCCTCATGAGATGGTGGTACCCACACCCGCATTGAATTCNCACCCT
rJMFF023F04+ ACACCCGCATNGAATTCCCNCCCT
____________________________________________________________
consensus AGCTTTGCGGCGGCTCCTCATGAGATGGTGGTACCCACACCCGCATTGAATTCCCACCCT
. : . : . : . : . : . :
rJMFF041F11+ TCCCGGTTTCTACAGCAACAGATGGGCGAGGCGTCGGCAGCTAGGGTTGGGAATTACTTG
rJMFF032M17+ TCCCGGTTTNTACAGCAACAGATGGGCGAGGCGTCGGCAGNTAGGGTTGGGAATTACTTG
rJMFF027J21+ TCCCGGTTTNTACAGCAACAGATGGGCGAGGCGTCGGCAGNTAGGGTTGGGAATTACTTG
rJMFF010K11+ TCCCGGTTTNTACAGCAACAGATGGGCGAGGCGTCGGCAGNTAGGGTTGGGAATTACTTG
rJMFF006O01+ TACAGCAACAGATGGGCGAGGCGTCGGCAGNTAGGGTTGGGAATTACTTG
rJMFF023F04+ TCCCGGTTTNTACAGCAACAGATGGGCGAGGCGTCGGCAGNTAGGGTTGGGAATTACTTG
rJMFF019P20+ ACAGATGGGCGAGGCGTCGGCANCTAGGGTTGGGAATTACTTG
____________________________________________________________
consensus TCCCGGTTTCTACAGCAACAGATGGGCGAGGCGTCGGCAGCTAGGGTTGGGAATTACTTG
. : . : . : . : . : . :
rJMFF041F11+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCCTTCA
JMFN034K03- ACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCCTTCA
rJMFF032M17+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCCTTCA
rJMFF027J21+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCNTTCA
rJMFF010K11+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCNTTCA
rJMFF006O01+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCNTTCA
rJMFF023F04+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCNTTCA
rJMFF019P20+ CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCNTTCA
____________________________________________________________
consensus CCCATAGCACAAGGCCACCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACCTCCTTCA
. : . : . : . : . : . :
rJMFF041F11+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGCTATGGCTATTATCTTACTGTTAATATG
JMFN034K03- TCCGGCCGAAGAGATGACGACGGACGTTAAAGCTATGGCTATTATCTTACTGTTAATATG
rJMFF032M17+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGNTATGGCTATTATCTTACTGTTAATATG
rJMFF027J21+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGCTATGGCTATTATCTTACTGTTAATATG
rJMFF010K11+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGCTATGGCTATTATCTTACTGTTAATATG
rJMFF006O01+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGNTATGGCTATTATCTTACTGTTAATATG
rJMFF023F04+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGNTATGGCTATTATCTTACTGTTAATATG
rJMFF019P20+ TCCGGCCGAAGAGATGACGACGGACGTTAAAGNTATGGCTATTATCTTACTGTTAATATG
____________________________________________________________
consensus TCCGGCCGAAGAGATGACGACGGACGTTAAAGCTATGGCTATTATCTTACTGTTAATATG
. : . : . : . : . : . :
rJMFF041F11+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
JMFN034K03- GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF032M17+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF027J21+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF010K11+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF006O01+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF023F04+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
rJMFF019P20+ GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
____________________________________________________________
consensus GCGATATATATATATATATGTGTGTGTGTGTGTGTGGGGCTGTTGCTGTCTGTTATTGTT
. : . : . : . : . : . :
rJMFF041F11+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
JMFN034K03- GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF032M17+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF027J21+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF010K11+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF006O01+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF023F04+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
rJMFF019P20+ GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
____________________________________________________________
consensus GTTGTGTAGATGAAAAATTGTTGTTAATTTTAGGGTTTAGGGTTTAGCGAGTGAAGAATG
. : . : . : . : . : . :
rJMFF041F11+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
JMFN034K03- AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF032M17+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF027J21+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF010K11+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF006O01+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF023F04+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
rJMFF019P20+ AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
____________________________________________________________
consensus AAAGTAGGGTTGCGCACTTGATGAATTAAACTTAGGCGGTTTGCTTCATTCCATTTCTTA
. : . : . : . : . : . :
rJMFF041F11+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
JMFN034K03- GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
rJMFF032M17+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
rJMFF027J21+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
rJMFF010K11+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGANGTCCTCCA
rJMFF006O01+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
rJMFF023F04+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
rJMFF019P20+ GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
____________________________________________________________
consensus GTCTTTCAATTTCTCCAGTTTTGGGTGTTTGGTGATGAATTGGTGGTGGGAAGTCCTCCA
. : . : . : . : . : . :
rJMFF041F11+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
JMFN034K03- CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF032M17+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF027J21+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF010K11+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF006O01+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF023F04+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
rJMFF019P20+ CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
____________________________________________________________
consensus CCTTGGGCACAACACAATGCTCATAATAAATTCAATTGTTCACCTGGGTCATTAGAAGAT
. : . : . : . : . : . :
rJMFF041F11+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
JMFN034K03- ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF032M17+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF027J21+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF010K11+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF006O01+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF023F04+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
rJMFF019P20+ ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
____________________________________________________________
consensus ATACTAGGGTCTGCTTTGTGGACTATGAAGAAATGTAGTTCCACACGTGTTCATGAATGT
. : . : . : . : . : . :
rJMFF041F11+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGT
JMFN034K03- TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF032M17+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF027J21+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF010K11+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF006O01+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF023F04+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
rJMFF019P20+ TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
____________________________________________________________
consensus TTTGTAATGAAGCCAAGGAGGTTTCAAGTCAATAACATTTCTGTAATTTGTTGCTCAGCT
. : . : . : . : . : . :
JMFN034K03- AGCTAGCTAGCTTGCT
rJMFF032M17+ AGCTAGCTAGCTTGCTAAAATA
rJMFF027J21+ A
rJMFF010K11+ AGCTAGCTAGCTTGCTAAAATA
rJMFF006O01+ AGCTAGCTAGCTTGCTAAAATA
rJMFF023F04+ AGCTAGCTAGCTTGCTAAAATATGAGATGAGTGATTTGGACTTCATTACTGTGCAAAT
rJMFF019P20+ AGCTAGCTAGCTTGCTAAAATATGAGATGAGTGATTTGGACTTCATTACTGTGCAAATAT
____________________________________________________________
consensus AGCTAGCTAGCTTGCTAAAATATGAGATGAGTGATTTGGACTTCATTACTGTGCAAATAT