Contig 008212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019J12Sequence563000101 (3)ref|XP_006353341.1|2e-101PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum]791008212 (3)ref|XP_007038628.1|1e-35XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro
JMFF020B23Sequence627000101 (3)ref|XP_006353341.1|2e-117PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum]736008212 (3)ref|XP_007038628.1|5e-32XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro
JMSF036C11Sequence728000101 (3)ref|XP_006353341.1|1e-136PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum]741008212 (3)ref|XP_009780428.1|6e-40PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF036C11+ TATGTACGCCAT
rJMFF019J12+ ATGTACGCCAT
                      ____________________________________________________________
consensus TATGTACGCCAT
 
. : . : . : . : . : . :
rJMSF036C11+ GCATGCTTCATACTGATGAGCAAGACGACAACCA-TTCAACATCTAGCAGTGCACAGAAT
rJMFF020B23+ TAGCAGTGCACAGAAT
rJMFF019J12+ GCATGCTTCATACTGATGAGCAAGACGACAACCATTTCAACATTTAGCAGTGCACAGAAT
                      ____________________________________________________________
consensus GCATGCTTCATACTGATGAGCAAGACGACAACCATTTCAACATTTAGCAGTGCACAGAAT
 
. : . : . : . : . : . :
rJMSF036C11+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
rJMFF020B23+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCNTGCCACGTGTAAC
rJMFF019J12+ ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
                      ____________________________________________________________
consensus ATTAGAAGGAACCGTGTAGCTTCAGTTTCTTCAGATATTTTTTGTCCTGCCACGTGTAAC
 
. : . : . : . : . : . :
rJMSF036C11+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
rJMFF020B23+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
rJMFF019J12+ CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
                      ____________________________________________________________
consensus CCCTTTCCTTCTGTTGCTATCCCTTTGTGCACATGCAATGAGGGGCCATGCCCGACTTTT
 
. : . : . : . : . : . :
rJMSF036C11+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
rJMFF020B23+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
rJMFF019J12+ GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
                      ____________________________________________________________
consensus GAATCCAGAGATAATGAAGTTCAAGAGGGGTCTCACCATCAATCAGAATCGACATCAGAG
 
. : . : . : . : . : . :
rJMSF036C11+ GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
rJMFF020B23+ GAGCAAGAGGAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
rJMFF019J12+ GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
                      ____________________________________________________________
consensus GAGCAAGAGAAGATGGGAGGAGTAAGGTTGGAGAAAACTACGTGCTCAAGCATGTTTTGG
 
. : . : . : . : . : . :
rJMSF036C11+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
rJMFF020B23+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
rJMFF019J12+ GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
                      ____________________________________________________________
consensus GGCAGAAGGAGCTGCAGCAGGGAGAATCAGTGTAATGCTGAAATTAATGCTTGAACCACC
 
. : . : . : . : . : . :
rJMSF036C11+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
rJMFF020B23+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
rJMFF019J12+ CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
                      ____________________________________________________________
consensus CCCCTTGGTTTGGAAACATATCCATAGAGGGATGGAACTTTGTGAACAGAGCAGTTAACG
 
. : . : . : . : . : . :
rJMSF036C11+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
rJMFF020B23+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
rJMFF019J12+ ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
                      ____________________________________________________________
consensus ATGAAATCACCATACTTTCGCATGTTGTTCTCTTGGCTTGGCTTGGCTGGTGTTGTGATA
 
. : . : . : . : . : . :
rJMSF036C11+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
rJMFF020B23+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
rJMFF019J12+ AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
                      ____________________________________________________________
consensus AATTATCCAGGTCAGGAATTGCAATGTCTTGACCCATATTAGATTGCCTAAAGACGCATG
 
. : . : . : . : . : . :
rJMSF036C11+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
rJMFF020B23+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
rJMFF019J12+ GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
                      ____________________________________________________________
consensus GCCTCTGGGTGGTGGCTTTTAAAGTAATCCAACATTGAGAATACAGTGTGGTTGAAATAT
 
. : . : . : . : . : . :
rJMSF036C11+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
rJMFF020B23+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
rJMFF019J12+ ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
                      ____________________________________________________________
consensus ACAAGATTGGCATTTGTAGTTGGAGGCCGAGGCCCCGTCTGTAGTAAGTGAGCATTTTGT
 
. : . : . : . : . : . :
rJMSF036C11+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
rJMFF020B23+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
rJMFF019J12+ ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
                      ____________________________________________________________
consensus ATTGTTTCTAGGAGATTAGTGATGTTTGTAAATGTGAATCCTTAGGGTGGTGGGTGTGTA
 
. : . : . : . : . : . :
rJMSF036C11+ AAGCTGCTGA
rJMFF020B23+ AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCAT
rJMFF019J12+ AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCATTNTACAAAA
                      ____________________________________________________________
consensus AAGCTGCTGATAAACAAGTGAATGTAAGGGAAGGAAATATATTTGCATCATTNTACAAAA