Contig 008189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009H01Sequence547001624 (2)ref|XP_003537244.1|4e-42PREDICTED: zinc finger CCCH domain-containing protein 21-like [Glycine max] gb|691008189 (4)gb|ABA81871.1|2e-34unknown [Solanum tuberosum]
JMFF014G01Sequence569001624 (2)ref|XP_003537244.1|4e-48PREDICTED: zinc finger CCCH domain-containing protein 21-like [Glycine max] gb|717008189 (4)gb|ABA81871.1|2e-35unknown [Solanum tuberosum]
JMFF036L14Sequence445008189 (4)gb|ABA81871.1|5e-18unknown [Solanum tuberosum]420008189 (4)gb|ABA81871.1|4e-18unknown [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF009H01+ GCTAGAAGAAGAAGCAGATAAAGTATCTGTT
rJMFF014G01+ TTTTGAAATCCCCAGATGAAGGCTNTGCTAGAAGAAGAAGCAGATAAAGTATCTGTT
                      ____________________________________________________________
consensus TTTTGAAATCCCCAGATGAAGGCTNTGCTAGAAGAAGAAGCAGATAAAGTATCTGTT
 
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rJMFF009H01+ GAGGAAGAGATTGAAAATCAGCGTTCGAAATTGACTAAATCAACTCCCATGACCCCCGAT
rJMFF014G01+ GAGGAAGAGATTGAAAATCAGCGTTCGAAATTGACTAAATCAACTCCCATGACCCCCGAT
                      ____________________________________________________________
consensus GAGGAAGAGATTGAAAATCAGCGTTCGAAATTGACTAAATCAACTCCCATGACCCCCGAT
 
. : . : . : . : . : . :
rJMFF009H01+ CTATTTATGGAATGGAAGAAAAAGAAAAGGGAAGAGAAAGAAGCTCAATTGGCCTTGCAA
rJMFF014G01+ CTATTTATGGAATGGAAGAAAAAGAAAAGGGAAGAGAAAGAAGCTCAATTGGCCTTGCAA
                      ____________________________________________________________
consensus CTATTTATGGAATGGAAGAAAAAGAAAAGGGAAGAGAAAGAAGCTCAATTGGCCTTGCAA
 
. : . : . : . : . : . :
rJMFF009H01+ ATGGCAGAGAGAGCCAAGAATGATCGCATGAGTGGACGTGAGCTGTTCATGGCAGACTCC
JMFF036L14- ACGTGAGCTGTTCATGGCAGACTCC
rJMFF036L14+ ACGTGAGCTGTTCATGGCAGACTCC
rJMFF014G01+ ATGGCAGAGAGAGCCAAGAATGATCGCATGAGTGGACGTGAGCTGTTCATGGCAGACTCC
                      ____________________________________________________________
consensus ATGGCAGAGAGAGCCAAGAATGATCGCATGAGTGGACGTGAGCTGTTCATGGCAGACTCC
 
. : . : . : . : . : . :
rJMFF009H01+ AGTTGGTTTGTGGATGACATTGGCGCCTATGATAAATATGAAAGGGAGGAAGAGTCGAAT
JMFF036L14- AGTTGGTTTGTGGATGACATTGGCGCCTATGATAAATATGAAAGGGAGGAAGAGTCGAAT
rJMFF036L14+ AGTTGGTTTGTGGATGACATTGGCGCCTATGATAAATATGAAAGGGAGGAAGAGTCGAAT
rJMFF014G01+ AGTTGGTTTGTGGATGACATTGGCGCCTATGATAAATATGAAAGGGAGGAAGAGTCGAAT
                      ____________________________________________________________
consensus AGTTGGTTTGTGGATGACATTGGCGCCTATGATAAATATGAAAGGGAGGAAGAGTCGAAT
 
. : . : . : . : . : . :
rJMFF009H01+ GAACAAAAGGTTGACAAAGATTCTTCTAAAGGCGAGCCAAGTACCTCGACCTCAGCCCCA
JMFF036L14- GAACAAAAGGTTGACAAAGATTCTTCTAAAGGCGAGACGAGTACCTCGACCTCAGCCCCA
rJMFF036L14+ GAACAAAAGGTTGACAAAGATTCTTCTAAAGGCGAGACGAGTACCTCGACCTCAGCCCCA
rJMFF014G01+ GAACAAAAGGTTGACAAAGATTCTTCTAAAGGCGAGCCAAGTACCTCGACCTCAGCCCCA
                      ____________________________________________________________
consensus GAACAAAAGGTTGACAAAGATTCTTCTAAAGGCGAGACGAGTACCTCGACCTCAGCCCCA
 
. : . : . : . : . : . :
rJMFF009H01+ GGAACCAGTGACTCCAAAGATGTTTCTGATGTTGATGATGATGACCTCGACGACGATTTG
JMFF036L14- GGAACCAGTGACTCCAAAGATGTTTCTGATGTTGATGATGATGACCTCGACGACGATTTG
rJMFF036L14+ GGAACCAGTGACTCCAAAGATGTTTCTGATGTTGATGATGATGACCTCGACGACGATTTG
rJMFF014G01+ GGAACCAGTGACTCCAAAGATGTTTCTGATGTTGATGATGATGACCTCGACGACGATTTG
                      ____________________________________________________________
consensus GGAACCAGTGACTCCAAAGATGTTTCTGATGTTGATGATGATGACCTCGACGACGATTTG
 
. : . : . : . : . : . :
rJMFF009H01+ GATGTTGACGAGTTGAATGAACTGGAGGCGAGCCTTTCGAAAACAACATTACAAATCAAA
JMFF036L14- GATGTTGACGAGTTGAATGAACTGGAGGCGAGCCTTTCGAAAACAACATTACAAATCAAA
rJMFF036L14+ GATGTTGACGAGTTGAATGAACTGGAGGCGAGCCTTTCGAAAACAACATTACAAATCAAA
rJMFF014G01+ GATGTTGACGAGTTGAATGAACTGGAGGCGAGCCTTTCGAAAACAACATTACAAATCAAA
                      ____________________________________________________________
consensus GATGTTGACGAGTTGAATGAACTGGAGGCGAGCCTTTCGAAAACAACATTACAAATCAAA
 
. : . : . : . : . : . :
rJMFF009H01+ GAAGCCGGTGACAAAGCATGAGCCAAGAATTTGAATTGATGAGCTTCTCTTGTTGCTTTT
JMFF036L14- GAAGCCGGTGACAAAGCATGAGCCAAGAATTTGAATTGATGAGCTTCTCTTGTTGCTTTT
rJMFF036L14+ GAAGCCGGTGACAAAGCATGAGCCAAGAATTTGAATTGATGAGCTTCTCTTGTTGCTTTT
rJMFF014G01+ GAAGCCGGTGACAAAGCATGAGCCAAGAATTTGAATTGATGAGCTTCTCTTGTTGCTTTT
                      ____________________________________________________________
consensus GAAGCCGGTGACAAAGCATGAGCCAAGAATTTGAATTGATGAGCTTCTCTTGTTGCTTTT
 
. : . : . : . : . : . :
rJMFF009H01+ TGAAGTAATTTTCTGAATCCTGAACCTAAATATTATCGATTTTGGCACTTCATATTTTCT
JMFF036L14- TGAAGTAATTTTCTGAATCCTGAACCTAAATATTATCGATTTTGGCACTTCATATTTTCT
rJMFF036L14+ TGAAGTAATTTTCTGAATCCTGAACCTAAATATTATCGATTTTGGCACTTCATATTTTCT
rJMFF014G01+ TGAAGTAATTTTCTGAATCCTGAACCTAAATATTATCGATTTTGGCACTTCATATTTTCT
                      ____________________________________________________________
consensus TGAAGTAATTTTCTGAATCCTGAACCTAAATATTATCGATTTTGGCACTTCATATTTTCT
 
. : . : . : . : . : . :
rJMFF009H01+ TTTTTCTACCCCCATCTTTGCACTCTAAAACGAAATAAATGGATTTCGATATGAGTACTT
JMFF036L14- TTTTTCTACCCCCATCTTTGCACTCTAAAACGAAATAAATGGATTTCGATA
rJMFF036L14+ TTTTTCTACCCCCATCTTTGCACTCTAAAACGAAA
rJMFF014G01+ TTTTTCTACCCCCATCTTTGCACTCTAAAACGAAATAAATGGATTTCGATATGAGTACTT
                      ____________________________________________________________
consensus TTTTTCTACCCCCATCTTTGCACTCTAAAACGAAATAAATGGATTTCGATATGAGTACTT
 
. : . : . : . : . : . :
rJMFF009H01+ TGCCCTTTTTTCTCCAAGCCCACAGACAGTGAACTAGTGACCTAATTATTCCCTTCTTTG
rJMFF014G01+ TGCCCTTTTTTCTCCAAGCCCACAGACAGTGAACTAGTGACCTAATTATTCCCTTCTTTG
                      ____________________________________________________________
consensus TGCCCTTTTTTCTCCAAGCCCACAGACAGTGAACTAGTGACCTAATTATTCCCTTCTTTG