| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012P17 | Sequence | 529 | 010773 (5) | ref|XP_010551185.1| | 1e-90 | PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABG3f [Tarenaya hasslerian | 243 | 008183 (5) | |||
| JMFF017E23 | Sequence | 548 | 010773 (5) | ref|XP_010551185.1| | 7e-97 | PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABG3f [Tarenaya hasslerian | 287 | 008183 (5) | |||
| JMFF028I20 | Sequence | 588 | 010773 (5) | ref|XP_010551185.1| | 5e-106 | PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABG3f [Tarenaya hasslerian | 266 | 008183 (5) | |||
| JMFF028M08 | Sequence | 404 | 012885 (11) | gb|AAP40022.1| | 5e-23 | callus-expressing factor [Nicotiana tabacum] | 169 | 008183 (5) | |||
| JMFF038B09 | Sequence | 413 | 010773 (5) | gb|AAM60858.1| | 6e-61 | GTP binding protein, putative [Arabidopsis thaliana] | 248 | 008183 (5) | |||
This contig is upended
. : . : . : . : . : . :
rJMFF017E23+ GTNNNTTTTTTNGNNANTGNNNNTTTNNNNGTNCNAAAACNNGGNGGGNNAA
____________________________________________________________
consensus GTNNNTTTTTTNGNNANTGNNNNTTTNNNNGTNCNAAAACNNGGNGGGNNAA
. : . : . : . : . : . :
rJMFF028I20+ TTTTTTTTTTTTTTTTTTTTCGGTTTTCCCTTAATG
rJMFF017E23+ TTTTNACCCCGGGNATTTTTNCNNTTTTTTTTTTTTTTTTTTTTCGGTTTTCCCTTAATG
rJMFF028M08+ TTTTCCCTTAATG
rJMFF038B09+ TTTTTTTTTTTTTTTTTTTTCGGTTTTCCCTTAATG
rJMFF012P17+ TTTTTTTTTTTTTTTTTTTTCGGTTTTCCCTTAATG
____________________________________________________________
consensus TTTTNACCCCGGGNATTTTTNCNNTTTTTTTTTTTTTTTTTTTTCGGTTTTCCCTTAATG
. : . : . : . : . : . :
rJMFF028I20+ AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
rJMFF017E23+ AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
rJMFF028M08+ AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
rJMFF038B09+ AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
rJMFF012P17+ AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
____________________________________________________________
consensus AATTGTTGCTTGTTGTCAAGCTGCCCTTGTACATTAGCCTTTACATTCAGCAGATTGATT
. : . : . : . : . : . :
rJMFF028I20+ GGTCCTGGAGTGCTTGTTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
rJMFF017E23+ GGTCCTGGAGTGCTTGTTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
rJMFF028M08+ GGTCCTGGAGTGCTNGNTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
rJMFF038B09+ GGTCCTGGAGTGCTTGTTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
rJMFF012P17+ GGTCCTGGAGTGCTTGTTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
____________________________________________________________
consensus GGTCCTGGAGTGCTTGTTGATGGTAGTCTTTGGTACTTCTTGTCCTAATAACCTATGGGC
. : . : . : . : . : . :
rJMFF028I20+ CGGAGGGTTCCATATTATTTATTGTTATAATTGCTG
rJMFF017E23+ CGGAGGGTTCCATATTATTTATTGTTATAATTGCTGTTCAAAGATTGACATAATT
rJMFF028M08+ CGGAGGGTTCCATATTATNTANTGTTATAATTGC
rJMFF038B09+ CGGAGGGTTCCATATTATTTATTGTTATAATTGCTGTTCAAAGATTGACATAATT
rJMFF012P17+ CGGAGGGTTCCATATTATTTATTGTTATAATTGCTGTTCAAAGATTGACATAATTTTTAT
____________________________________________________________
consensus CGGAGGGTTCCATATTATTTATTGTTATAATTGCTGTTCAAAGATTGACATAATTTTTAT