| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A20 | Sequence | 471 | 003777 (4) | ref|XP_009795542.1| | 2e-56 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 776 | 008180 (6) | gb|KDP29954.1| | 7e-106 | hypothetical protein JCGZ_18523 [Jatropha curcas] |
| JMFF039A14 | Sequence | 572 | 003777 (4) | ref|XP_009795542.1| | 2e-77 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 706 | 008180 (6) | gb|KDP29954.1| | 1e-118 | hypothetical protein JCGZ_18523 [Jatropha curcas] |
| JMFF050I01 | Sequence | 627 | 003777 (4) | ref|XP_009795542.1| | 3e-91 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 637 | 008180 (6) | ref|XP_011008074.1| | 1e-89 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth |
| JMSF029C13 | Sequence | 538 | 008180 (6) | ref|XP_011008074.1| | 2e-76 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 494 | 008180 (6) | ref|XP_011008074.1| | 1e-76 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth |
| JMSF035M21 | Sequence | 657 | 003777 (4) | ref|XP_009795542.1| | 4e-90 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 669 | 008180 (6) | ref|XP_002320530.2| | 4e-113 | hypothetical protein POPTR_0014s16720g [Populus trichocarpa] gb|EEE98845.2| hypo |
This contig is upended
. : . : . : . : . : . :
rJMFF039A14+ TATCATATGGAAAG
____________________________________________________________
consensus TATCATATGGAAAG
. : . : . : . : . : . :
rJMSF035M21+ TCTAATGGAGAGCTGNTGCTTTCATATGGANTTGT-CCCCAGAGAAGGCACAAATCC
rJMFF039A14+ AAGTCTAATGGAGAGCTGTTGCTTTCATATGGATTNGT-CCCCAGAGAAGGCACAAATCC
rJMFF012A20+ TCTAATGGAGAGCTGTTGCTTTCATATGGATTTGTCCCCCAGAGAAGGCACAAATCC
____________________________________________________________
consensus AAGTCTAATGGAGAGCTGTTGCTTTCATATGGATTTGT-CCCCAGAGAAGGCACAAATCC
. : . : . : . : . : . :
rJMSF035M21+ CAGTGATTCAGTTGAGGTGTCAGTGTCAATTAAGAAGTCTGACAAATGTTACAAGGAGAA
rJMFF039A14+ CAGTGATTCAGTTGAGGTGTCAGTGTCAATTAAGAAGTCTGACAAATGTTACAAGGAGAA
rJMFF050I01+ GAA
rJMFF012A20+ CAGTGATTCAGTTGAGGTGTCAGTGTCAATTAAGAAGTCTGACAAATGTTACAAGGAGAA
____________________________________________________________
consensus CAGTGATTCAGTTGAGGTGTCAGTGTCAATTAAGAAGTCTGACAAATGTTACAAGGAGAA
. : . : . : . : . : . :
rJMSF035M21+ GATGGAAGCTTTGAAAAAGCATGGATTATCTACATCAGAACGGTTTCCTGTACAAATTAC
rJMFF039A14+ GATGGAAGCTTTGAAAAAGCATGGATTATCTACATCAGAACGGTTTCCTGTACAAATTAC
rJMFF050I01+ GATGGAAGCTTTGAAAAAGCATGGATTATCTACATCAGAACGGTTTCCTGTACAAATTAC
rJMFF012A20+ GATGGAAGCTTTGAAAAAGCATGGATTATCTACATCAGAACGGTTTCCTGTACAAATTAC
____________________________________________________________
consensus GATGGAAGCTTTGAAAAAGCATGGATTATCTACATCAGAACGGTTTCCTGTACAAATTAC
. : . : . : . : . : . :
rJMSF035M21+ TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
rJMFF039A14+ TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
rJMSF029C13+ TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
JMSF029C13- TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
rJMFF050I01+ TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
rJMFF012A20+ TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
____________________________________________________________
consensus TGGGTGGCCATTGGAGTTGATGGCATATGCTTATTTAGCAGTCAGCCCCCCAAGTATGAA
. : . : . : . : . : . :
rJMSF035M21+ TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
rJMFF039A14+ TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
rJMSF029C13+ TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
JMSF029C13- TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
rJMFF050I01+ TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
rJMFF012A20+ TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
____________________________________________________________
consensus TAGACAATTTGAAGAGATGGCTGCTGCTGCATCAAATAGGACATCATCCAAGAAGGATAT
. : . : . : . : . : . :
rJMSF035M21+ CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
rJMFF039A14+ CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
rJMSF029C13+ CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
JMSF029C13- CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
rJMFF050I01+ CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
rJMFF012A20+ CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
____________________________________________________________
consensus CAGGTATCCTGAAATAGAGGAAGATGCATTGCAGTATATTCTTGATAGTTGTGAGTCTGG
. : . : . : . : . : . :
rJMSF035M21+ CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGGTGTAACAAA
rJMFF039A14+ CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
rJMSF029C13+ CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
JMSF029C13- CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
rJMFF050I01+ CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
rJMFF012A20+ CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
____________________________________________________________
consensus CATATCGAAGTACTCCAAATTCCTTCAGGCGAGTGGGGAAATGGATCTCGATGTAACAAA
. : . : . : . : . : . :
rJMSF035M21+ TCCAAAGCAACTTAACAGAAGGGTGTTTCTGAAACAGCTAGCCGTGGATTTGTGCACGAG
rJMFF039A14+ TCCAAAGCAACTTAACAGAAGGGTGTTTCTGAAACAGCTAGCCGTGGATTTGTGCACAAG
rJMSF029C13+ TCCAAAGCAACTTAACAGAAGGGTGTTTCAGAAACAGCTAGCCGTGGATTTGTGCACAAG
JMSF029C13- TCCAAAGCAACTTAACAGAAGGGTGTTTCAGAAACAGCTAGCCGTGGATTTGTGCACAAG
rJMFF050I01+ TCCAAAGCAACTTAACAGAAGGGTGTTTCTGAAACAGCTAGCCGTGGATTTGTGCACAAG
rJMFF012A20+ TCCAAAGCAACTTAACAGAAGGGTGTTTCTGAAACAGCTAGCCGTGGATTTGTGCACAAG
____________________________________________________________
consensus TCCAAAGCAACTTAACAGAAGGGTGTTTCTGAAACAGCTAGCCGTGGATTTGTGCACAAG
. : . : . : . : . : . :
rJMSF035M21+ CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
rJMFF039A14+ CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
rJMSF029C13+ CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
JMSF029C13- CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
rJMFF050I01+ CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
rJMFF012A20+ CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
____________________________________________________________
consensus CGAAAGGAGAATACTATTCCGGGCACAATATATATTGAGGAGGAGATTGAGGGATATAAG
. : . : . : . : . : . :
rJMSF035M21+ GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
rJMFF039A14+ GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
rJMSF029C13+ GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
JMSF029C13- GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
rJMFF050I01+ GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
rJMFF012A20+ GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
____________________________________________________________
consensus GAGTGGTGAACTAAGGGCGCTTAAAATTTTTGATGGTCTGAGAAACCTTTTCAAATGAGA
. : . : . : . : . : . :
rJMSF035M21+ ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAAC
rJMFF039A14+ ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAA-CATGCCAGTATTT
rJMSF029C13+ ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAACCATGCCAGTATTT
JMSF029C13- ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAA-CATGCCAGTATTT
rJMFF050I01+ ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAA-CATGCCAGTATTT
rJMFF012A20+ ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAA-CATGCCAGTATTT
____________________________________________________________
consensus ATCTGAGGGGAGGGAAATGGATGGGAATGAAGTACTTAGTTCTAAA-CATGCCAGTATTT
. : . : . : . : . : . :
rJMFF039A14+ ATTTTCGTGTACTCTGATTTT
rJMSF029C13+ ATTTTCGTGTAC
JMSF029C13- ATTTTCGTGTACTCTGATTTTTGAGAATATAAAAATGATGCATCGTTTACTTTC
rJMFF050I01+ ATTTTCGTGTACTCTGATTTTTGAGAATATAAAAATGATGCATCGTTTACTTTCAAAAAA
rJMFF012A20+ ATTTTCGTGTACTCTGATTTTTGAGAATATAAAAATGATGCATCGTTTACTTTCTTTCCT
____________________________________________________________
consensus ATTTTCGTGTACTCTGATTTTTGAGAATATAAAAATGATGCATCGTTTACTTTCTTTCCT
. : . : . : . : . : . :
rJMFF050I01+ AAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
rJMFF012A20+ GTTATCTACACATTCCAAATTTTACAAAACTAAACACCCTAATTATATGTATGATCAAGA
____________________________________________________________
consensus GTTATCTACACTTTCCAGGTTTTTCCGCCCTAAGGACCCTAATTATATGTATGATCAAGA