Contig 008177:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011N02Sequence524008177 (6)ref|XP_004238823.1|5e-20PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum]714008177 (6)ref|XP_004238823.1|7e-31PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum]
JMFF018I06Sequence528008177 (6)ref|XP_006355109.1|3e-31PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum]696008177 (6)ref|XP_006355109.1|8e-32PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum]
JMFN002C05Sequence520008177 (6)gb|KJB80208.1|3e-22hypothetical protein B456_013G086200 [Gossypium raimondii]
JMFN038E05Sequence596008177 (6)ref|XP_006355109.1|3e-32PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN002C05+ AGCTCTTTGATAGCAATATGAAAA
                      ____________________________________________________________
consensus AGCTCTTTGATAGCAATATGAAAA
 
. : . : . : . : . : . :
JMFN002C05+ GATAAATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTATATTC
rJMFF018I06- TTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
rJMFF011N02- ATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
                      ____________________________________________________________
consensus GATAAATTTTGAATGTTCAGGATTAAAACTCATAGAAGGTACAATTTTTTGTCTCTATTC
 
. : . : . : . : . : . :
JMFN002C05+ ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
rJMFF018I06- ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
rJMFF011N02- ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
                      ____________________________________________________________
consensus ACACGTAATTTTCAGTTCTTTCCAAAAACCCAGAATAAATTCTTAAGAACTCGTTTCTAA
 
. : . : . : . : . : . :
JMFN002C05+ GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
JMFN038E05+ TCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
rJMFF018I06- GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
rJMFF011N02- GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
                      ____________________________________________________________
consensus GCTTCAGCTTCATTTGAAAAAAATTGACTTATACCATCAACAGTAAAACCCAACCAAACC
 
. : . : . : . : . : . :
JMFN002C05+ CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFN038E05+ CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
rJMFF018I06- CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFF018I06+ TCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
JMFF011N02+ TTCACNTTATNTTNTTCAGGCATTTTATGTNTACAAACAGGG
rJMFF011N02- CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
                      ____________________________________________________________
consensus CTACTCTCACTCTTCTGCTTCACCTTATCTTCTTCAGGCATTTTATGTCTACAAACAGGG
 
. : . : . : . : . : . :
JMFN002C05+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFN038E05+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
rJMFF018I06- CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFF018I06+ CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
JMFF011N02+ CAAGACCCATGAATCCCTAACCACTTCTNTATACACTCCTTGTGAAATNTATGCCGGCAC
rJMFF011N02- CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
                      ____________________________________________________________
consensus CAAGACCCATGAATCCCTAACCACTTCTCTATACACTCCTTGTGAAATCTATGCCGGCAC
 
. : . : . : . : . : . :
JMFN002C05+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFN038E05+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
rJMFF018I06- GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFF018I06+ GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
JMFF011N02+ GGCATCTCCTTCACCGTCTCACCAACCCCCCAACTCCTCCAAGCAAATCGCACACTCACC
rJMFF011N02- GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
                      ____________________________________________________________
consensus GGCATCTCCTTCACCGTCTCACCAACCCCCC-ACTCCTCCAAGCAAATCGCACACTCACC
 
. : . : . : . : . : . :
JMFN002C05+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFN038E05+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
rJMFF018I06- TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFF018I06+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
JMFF011N02+ TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
rJMFF011N02- TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
                      ____________________________________________________________
consensus TTCTTCTTCTTCTTCTTCACCAATCTCCACGCTCCGCAGGGCCTCAATGGAAGCCTTCGA
 
. : . : . : . : . : . :
JMFN002C05+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFN038E05+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
rJMFF018I06- AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFF018I06+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
JMFF011N02+ AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
rJMFF011N02- AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
                      ____________________________________________________________
consensus AGCCGGCGGCAGACCATCTTTACCAAGTATGCCCGCCAGTAGAGAATCCAAGCTCGAGGA
 
. : . : . : . : . : . :
JMFN002C05+ AGACGATCTATCACTGC
JMFN038E05+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
rJMFF018I06- AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
JMFF018I06+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
JMFF011N02+ AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
rJMFF011N02- AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
                      ____________________________________________________________
consensus AGACGATCTATCACTGCCAGTGCCAGCTTCTACTACGAACACGCCTCCTGTCAATGGGCT
 
. : . : . : . : . : . :
JMFN038E05+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
rJMFF018I06- TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
JMFF018I06+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
JMFF011N02+ TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
rJMFF011N02- TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
                      ____________________________________________________________
consensus TAGGAGGATGAGCCGATCACCTAACTCGGCGTTTGTGAAGCCCAGGATGAAGGGTGGGAA
 
. : . : . : . : . : . :
JMFN038E05+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
rJMFF018I06- ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
JMFF018I06+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
JMFF011N02+ ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
rJMFF011N02- ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACAGGGGGACTCTGTTT
                      ____________________________________________________________
consensus ATCAGAGAAATCCATGTTTCCTGAAATTCTTGAGGGGTGAGAAACA-GGGGACTCTGTTT
 
. : . : . : . : . : . :
JMFN038E05+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAA
rJMFF018I06- CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
JMFF018I06+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
JMFF011N02+ CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
rJMFF011N02- CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT
                      ____________________________________________________________
consensus CGGAGGCCATTTCCGTTGCGTCGGAGATATTTCAGACGATTAGAGAGAGGAGTGGGAACT