Contig 008171:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010I23Sequence554000723 (4)ref|XP_006344538.1|7e-43PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like isoform X1 [So771008171 (4)ref|XP_009621427.1|1e-104PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia
JMSF015K23Sequence338000723 (4)ref|XP_006344538.1|1e-12PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like isoform X1 [So761008171 (4)ref|XP_009621427.1|1e-112PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia
JMSF021A12Sequence661000723 (4)ref|XP_010323392.1|5e-65PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Solanum808008171 (4)ref|XP_009799515.1|2e-118PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia
JMSF021M02Sequence695000723 (4)ref|XP_010323392.1|1e-71PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Solanum722008171 (4)ref|XP_009621427.1|2e-104PREDICTED: homogentisate phytyltransferase 1, chloroplastic isoform X2 [Nicotia

Alignment

This contig is upended


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rJMSF021A12+                                                          GGCATAATGATC
                      ____________________________________________________________
consensus                                                             GGCATAATGATC
 
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rJMSF021A12+          GTTTCATCTTTTGCTGTTATGAGTTTTNGGCTTGCAAGTGCTGTTGGTTCTTGGCCGTTG
rJMSF015K23+                                             AAGTGCTGTTGGTTCTTGGCCGTTG
                      ____________________________________________________________
consensus             GTTTCATCTTTTGCTGTTATGAGTTTTNGGCTTGCAAGTGCTGTTGGTTCTTGGCCGTTG
 
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rJMSF021A12+          TTTTGGGCTCTTTTCATCAGCTTTGGACTNGGAACTGCCTATTCAATCGATCTACCACTC
rJMSF021M02+                      TTCATCAGCTTTGGACTNGGAACTGCCTATTCAATCGATCTACCACTC
rJMSF015K23+          TTTTGGGCTCTTTTCATCAGCTTTGGACTTGGAACTGCCTATTCAATCGATCTACCACTC
rJMFF010I23+                      TTCATCAGCTTTGGACTTGGAACTGCCTATTCAATCGATCTACCACTC
                      ____________________________________________________________
consensus             TTTTGGGCTCTTTTCATCAGCTTTGGACTTGGAACTGCCTATTCAATCGATCTACCACTC
 
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rJMSF021A12+          CTCAGGTGGAAGAGATTCGCTTTGGTTGCTGCGATGTGCATCCTTGCTGTGCGAGCTGTC
rJMSF021M02+          CTCAGGTGGAAGAGATTCGCTTTGGTTGCTGCGATGTGCATCCTTGCTGTGCGAGCTGTC
rJMSF015K23+          CTCAGGTGGAAGAGATTCGCTTTGGTTGCTGCGATGTGCATCCTTGCTGTGCGAGCTGTC
rJMFF010I23+          CTCAGGTGGAAGAGATTCGCTTTGGTTGCTGCGATGTGCATCCTTGCTGTGCGAGCTGTC
                      ____________________________________________________________
consensus             CTCAGGTGGAAGAGATTCGCTTTGGTTGCTGCGATGTGCATCCTTGCTGTGCGAGCTGTC
 
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rJMSF021A12+          ATTGTTCAGATAGCATTCTATTTGCATATACAGACTCATGTTTATGGAAGACCGGTTGCC
rJMSF021M02+          ATTGTTCAGATAGCATTCTATTTGCATATACAGACTCATGTTTATGGAAGACCGGTTGCC
rJMSF015K23+          ATTGTTCAGATAGCATTCTATTTGCATATACAGACTCATGTTTATGGAAGACCGGTTGCC
rJMFF010I23+          ATTGTTCAGATAGCATTCTATTTGCATATACAGACTCATGTTTATGGAAGACCGGTTGCC
                      ____________________________________________________________
consensus             ATTGTTCAGATAGCATTCTATTTGCATATACAGACTCATGTTTATGGAAGACCGGTTGCC
 
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rJMSF021A12+          TTTTCGAAACCTGTAATGTTTGCAACAGCATTCATGAGCTTCTTCTCGGTTGTTATTGCA
rJMSF021M02+          TTTTCGAAACCTGTAATGTTTGCAACAGCATTCATGAGCTTCTTCTCGGTTGTTATTGCA
rJMSF015K23+          TTTTCGAAACCTGTAATGTTTGCAACAGCATTCATGAGCTTCTTCTCGGTTGTTATTGCA
rJMFF010I23+          TTTTCGAAACCTGTAATGTTTGCAACAGCATTCATGAGCTTCTTCTCGGTTGTTATTGCA
                      ____________________________________________________________
consensus             TTTTCGAAACCTGTAATGTTTGCAACAGCATTCATGAGCTTCTTCTCGGTTGTTATTGCA
 
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rJMSF021A12+          TTATTTAAGGACATTCCTGATATTGCTGGTGACAAGATCTTCGGAATTCGATCTTTTACT
rJMSF021M02+          TTATTTAAGGACATTCCTGATATTGCTGGTGACAAGATCTTCGGAATTCGATCTTTTACT
rJMSF015K23+          TTATTTAAGGACATTCCTGATATTGCTGGTGACAAGATCTTCGGAATTCGATCTTTTACT
rJMFF010I23+          TTATTTAAGGACATTCCTGATATTGCTGGTGACAAGATCTTCGGAATTCGATCTTTTACT
                      ____________________________________________________________
consensus             TTATTTAAGGACATTCCTGATATTGCTGGTGACAAGATCTTCGGAATTCGATCTTTTACT
 
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rJMSF021A12+          GTTCGATTGGGCCAAGAAAGGGTCTTCTGGATTTGTATTTCACTACTTCAAATGGCTTAC
rJMSF021M02+          GTTCGATTGGGCCAAGAAAGGGTCTTCTGGATTTGTATTTCACTACTTCAAATGGCTTAC
rJMSF015K23+          GTTCGATTGGGCCAAGAAAGGGTCTTCTGGATTTGTATTTCACTACTTCAAATGGCTTAC
rJMFF010I23+          GTTCGATTGGGCCAAGAAAGGGTCTTCTGGATTTGTATTTCACTACTTCAAATGGCTTAC
                      ____________________________________________________________
consensus             GTTCGATTGGGCCAAGAAAGGGTCTTCTGGATTTGTATTTCACTACTTCAAATGGCTTAC
 
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rJMSF021A12+          CTGGTCGCCATAGTGGTTGGAGCATCCTCCTCCTGTACCTGGAGCAAATATTTGACGGTT
rJMSF021M02+          CTGGTCGCCATAGTGGTTGGAGCATCCTCCTCCTGTACCTGGAGCAAATATTTGACGGTT
rJMSF015K23+          CTGGTCGCCATAGTGGTTGGAGCATCCTCCTCCTGTACCTGGAGCAAATATTTGACGGTT
rJMFF010I23+          CTGGTCGCCATAGTGGTTGGAGCATCCTCCTCCTGTACCTGGAGCAAATATTTGACGGTT
                      ____________________________________________________________
consensus             CTGGTCGCCATAGTGGTTGGAGCATCCTCCTCCTGTACCTGGAGCAAATATTTGACGGTT
 
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rJMSF021A12+          ATTGGTCATGCTGCCTTGGCCTTGATACTTTGGACTCGTGCTAAAACAATTGACTTAAGC
rJMSF021M02+          ATTGGTCATGCTGCCTTGGCCTTGATACTTTGGACTCGTGCTAAAACAATTGACTTAAGC
rJMSF015K23+          ATTGGTCATGCTGCCTTGGCCTTGATACTTTGGACTCGTGCTAAAACAATTGACTTAAGC
rJMFF010I23+          ATTGGTCATGCTGCCTTGGCCTTGATACTTTGGACTCGTGCTAAAACAATTGACTTAAGC
                      ____________________________________________________________
consensus             ATTGGTCATGCTGCCTTGGCCTTGATACTTTGGACTCGTGCTAAAACAATTGACTTAAGC
 
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rJMSF021A12+          AGAAAAGAAGCAATCACATCCTTCTACATGTTCATATGGAAGCTCTTCTACGCTGAGTAC
rJMSF021M02+          AGAAAAGAAGCAATCACATCCTTCTACATGTTCATATGGAAGCTCTTCTACGCTGAGTAC
rJMSF015K23+          AGAAAAGAAGCAATCACATCCTTCTACATGTTCATATGGAAGCTCTTCTACGCTGAGTAC
rJMFF010I23+          AGAAAAGAAGCAATCACATCCTTCTACATGTTCATATGGAAGCTCTTCTACGCTGAGTAC
                      ____________________________________________________________
consensus             AGAAAAGAAGCAATCACATCCTTCTACATGTTCATATGGAAGCTCTTCTACGCTGAGTAC
 
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rJMSF021A12+          CTACTGATACCATTCGTGAGGTGAGCTTGGAAACCGCCATTAGAATTTGGCTCGCCGCAA
rJMSF021M02+          CTACTGATACCATTCGTGAGGTGAGCTTGGAAACCGCCATTAGAATTTGGCTCGCCGCAA
rJMSF015K23+          CTACTGATACCATTCGTGAGGTGAGCTTGGAAACCGCCATTAGAATTTGGCTCGCCGCAA
rJMFF010I23+          CTACTGATACCATTCGTGAGGTGAGCTTGGAAACCGCCATTAGAATTTGGCTCGCCGCAA
                      ____________________________________________________________
consensus             CTACTGATACCATTCGTGAGGTGAGCTTGGAAACCGCCATTAGAATTTGGCTCGCCGCAA
 
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rJMSF021A12+          GATGCTTAGTGTGTTAGACTGTTAGGTTGATCTTGCTTGTAAATTCTGTTATTAGAACAC
rJMSF021M02+          GATGCTTAGTGTGTTAGACTGTTAGGTTGATCTTGCTTGTAAATTCTGTTATTAGAACAC
rJMSF015K23+          GATGCTTAGTGTGTTAGACTGTTAGGTTGATCTTGCTTGTAAATTCTGTTATTAGAACAC
rJMFF010I23+          GATGCTTAGTGTGTTAGACTGTTAGGTTGATCTTGCTTGTAAATTCTGTTATTAGAACAC
                      ____________________________________________________________
consensus             GATGCTTAGTGTGTTAGACTGTTAGGTTGATCTTGCTTGTAAATTCTGTTATTAGAACAC
 
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rJMSF021A12+          CCAAAGGTGTGTGCTTTTTGTCAACTTCATCGTTTCCATCTTCACAATTTGATTTGGCTC
rJMSF021M02+          CCAAAGGTGTGTGCTTTTTGTCAACTTCATCGTTTCCATCTTCACAATTTGATTTGGCTC
rJMSF015K23+          CCAAAGGTGTGTGCTTTTTGTCAACTTCATCGTTTCCATCTTCACAATTTGATTTGGCTC
rJMFF010I23+          CCAAAGGTGTGTGCTTTTTGTCAACTTCATCGTTTCCATCTTCACAATTTGATTTGGCTC
                      ____________________________________________________________
consensus             CCAAAGGTGTGTGCTTTTTGTCAACTTCATCGTTTCCATCTTCACAATTTGATTTGGCTC
 
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rJMSF021A12+          TCAATT                                                      
rJMSF021M02+          TCAATT                                                      
rJMSF015K23+          TCAATT                                                      
rJMFF010I23+          TCAATTTGGATAAGGTGTTATGTTATGAACAAATTAAATATTGGTCTTGTTTGGTAAAAT
                      ____________________________________________________________
consensus             TCAATTTGGATAAGGTGTTATGTTATGAACAAATTAAATATTGGTCTTGTTTGGTAAAAT