Contig 008164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009F14Sequence555007310 (3)ref|XP_009774840.1|8e-30PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves679008164 (3)ref|XP_009776396.1|1e-100PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves
JMFF037F03Sequence573007310 (3)ref|XP_009774840.1|5e-32PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves729008164 (3)ref|XP_009776396.1|1e-112PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves
JMSF015M04Sequence527007310 (3)ref|XP_009595898.1|2e-22PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana toment743008164 (3)ref|XP_009776396.1|2e-118PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015M04+ TGGGAAACGGTTCCGAACTCGGAGTACTGAAG
rJMFF037F03+ AGTACTGAAG
                      ____________________________________________________________
consensus TGGGAAACGGTTCCGAACTCGGAGTACTGAAG
 
. : . : . : . : . : . :
rJMSF015M04+ TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
rJMFF037F03+ TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
rJMFF009F14+ TGTAAAACTGCTCTCATTG
                      ____________________________________________________________
consensus TTGTCAAGTTGGTTGATTTACTTGATGAGGCCAAGAGCCGGTGTAAAACTGCTCTCATTG
 
. : . : . : . : . : . :
rJMSF015M04+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
rJMFF037F03+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
rJMFF009F14+ AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
                      ____________________________________________________________
consensus AAAGAGGCAAAGCGGAAGAGTGGACTGAAGAGGAGCTTGAGCAAACTGCTGAAGCTGTTG
 
. : . : . : . : . : . :
rJMSF015M04+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
rJMFF037F03+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
rJMFF009F14+ GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
                      ____________________________________________________________
consensus GATATGGTGCTGTTAAATATGCTGACCTGAAAAACAATAGATTGACCAATTACACCTTCA
 
. : . : . : . : . : . :
rJMSF015M04+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
rJMFF037F03+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
rJMFF009F14+ ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
                      ____________________________________________________________
consensus ATTTTGATCAGATGCTTAGCGACAAGGGTAATACTGCTGTATATCTACTGTATGCACATG
 
. : . : . : . : . : . :
rJMSF015M04+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAAGACATAGAGGAGCTAAAAAAGACTG
rJMFF037F03+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
rJMFF009F14+ CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
                      ____________________________________________________________
consensus CACGAATTTGTTCAATCATCAGGAAATCAGGAAAGGACATAGAGGAGCTAAAAAAGACTG
 
. : . : . : . : . : . :
rJMSF015M04+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
rJMFF037F03+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
rJMFF009F14+ GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
                      ____________________________________________________________
consensus GGAGACTAGATTTAGCTCATCACGATGAGCGAATGTTGGGAGTCCATTTACTTCAATTTC
 
. : . : . : . : . : . :
rJMSF015M04+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
rJMFF037F03+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
rJMFF009F14+ CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
                      ____________________________________________________________
consensus CTGAGGTTGTTGAAGAAGCTTGTACGAATCTTCTACCGAATTTATTGTGCGAGTATCTCT
 
. : . : . : . : . : . :
rJMSF015M04+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
rJMFF037F03+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
rJMFF009F14+ ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
                      ____________________________________________________________
consensus ATAACGTATCCGAGGACTTCACAAGATTCTACACAAACTGTCAGGTGGTTGGCTCGGCCC
 
. : . : . : . : . : . :
rJMSF015M04+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
rJMFF037F03+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
rJMFF009F14+ AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
                      ____________________________________________________________
consensus AGGAAACAAGTAGGCTCTTGCTTTGTGAAGCAACCGCAGTTGTGATGAGGAAGTGCTTCC
 
. : . : . : . : . : . :
rJMSF015M04+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
rJMFF037F03+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
rJMFF009F14+ ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
                      ____________________________________________________________
consensus ACTTATTGGGTATCACCCCAGTTTATAAAATCTGATGACCTGTTTATACTCACCCTCTTG
 
. : . : . : . : . : . :
rJMSF015M04+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
rJMFF037F03+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
rJMFF009F14+ ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
                      ____________________________________________________________
consensus ATACTTCTAATGATTATTTGCTTTGTTATTTCCCGGCATGTATTTAAACCAGGAAATATC
 
. : . : . : . : . : . :
rJMSF015M04+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAAC
rJMFF037F03+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTA
rJMFF009F14+ CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTAC
                      ____________________________________________________________
consensus CTTGCTTTATACACAAACTTGCCTTTGTAAATTTGGCATGAACATGCATTAACTAGTTAC