Contig 008152:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O22Sequence209003230 (7)838008152 (8)ref|XP_008245916.1|3e-122PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume]
JMFF025M18Sequence572003230 (7)ref|XP_009616625.1|4e-70PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom734008152 (8)ref|XP_008245916.1|3e-118PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume]
JMFF035D06Sequence538003230 (7)ref|XP_009616625.1|5e-71PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom659008152 (8)ref|XP_011081701.1|4e-95PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum]
JMFF036E11Sequence557003230 (7)ref|XP_009780253.1|9e-77PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl536008152 (8)ref|XP_011081701.1|4e-95PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum]
JMFF039E06Sequence603003230 (7)ref|XP_009616625.1|2e-78PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom691008152 (8)ref|XP_011081701.1|7e-107PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Sesamum indicum]
JMFF043C23Sequence643003230 (7)ref|XP_009780253.1|1e-97PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl518008152 (8)ref|XP_007012245.1|1e-61Serine hydroxymethyltransferase 3 isoform 2, partial [Theobroma cacao] gb|EOY29
JMSF001L23Sequence281003230 (7)ref|XP_009780253.1|9e-15PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana syl712008152 (8)ref|XP_008245916.1|8e-110PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Prunus mume]
JMSF003J18Sequence524008152 (8)ref|XP_009591252.1|5e-32PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Nicotiana tom

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001L23+ TCTAGAAACTGCCATTAA
rJMFF025M18+ CGGAGTTGATCTAGAAACTGCCATTAA
rJMFF007O22+ GCGGTATGATATTTTCAAGAAGGATCCTGTTTTCGGAGTTGATCTAGAANCTGCCATTAA
                      ____________________________________________________________
consensus GCGGTATGATATTTTCAAGAAGGATCCTGTTTTCGGAGTTGATCTAGAAACTGCCATTAA
 
. : . : . : . : . : . :
rJMSF001L23+ TAATGCTG-TTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF039E06+ TGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF036E11+ TAGC
rJMFF025M18+ TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
rJMFF007O22+ TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
                      ____________________________________________________________
consensus TAATGCTGTTTTTCCTGGTTTACAGGGTGGTCCACATAATCACACTATTGGGGGTTTAGC
 
. : . : . : . : . : . :
rJMSF001L23+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF039E06+ CGTCTGCCTGAAGTATGCAAAGTCACGTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF035D06+ CTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF036E11+ CGTCTGCNTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF025M18+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
rJMFF007O22+ CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
                      ____________________________________________________________
consensus CGTCTGCCTGAAGTATGCAAAGTCACCTGAATTTAAGGCCTACCAGAATAAGGTAGTTTC
 
. : . : . : . : . : . :
rJMSF001L23+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF039E06+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF035D06+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF036E11+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF025M18+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
rJMFF007O22+ CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
                      ____________________________________________________________
consensus CAATTGTAGAGCTCTTGCACGCCGGTTAGTGGAGTTGGGATACAAACTGGTATCAGGCGG
 
. : . : . : . : . : . :
rJMSF001L23+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF039E06+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF035D06+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF036E11+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGNTAGAGT
rJMFF025M18+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMFF043C23+ TGAGACCCATGGGTATTGATGGTGCTAGAGT
rJMSF003J18+ ACCCATGGGTATNGATGGTGNTAGAGT
rJMFF007O22+ AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
                      ____________________________________________________________
consensus AAGTGACAATCATTTGGTTCTTGTGGATCTGAGACCCATGGGTATTGATGGTGCTAGAGT
 
. : . : . : . : . : . :
rJMSF001L23+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF039E06+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF035D06+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF036E11+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF025M18+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMFF043C23+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
rJMSF003J18+ GGAGAAAATCCTNGACANGGCATCGATCACACTCAATAAGANTTCNGTACCCGGNGATAA
rJMFF007O22+ GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
                      ____________________________________________________________
consensus GGAGAAAATCCTTGACATGGCATCGATCACACTCAATAAGAATTCTGTACCCGGTGATAA
 
. : . : . : . : . : . :
rJMSF001L23+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF039E06+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF035D06+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF036E11+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF025M18+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMFF043C23+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
rJMSF003J18+ AAGTGCGCTNGTCCCTGGTGGCATCNGTATCGGGGCACCANCCATGACCACCAGAGGTTT
rJMFF007O22+ AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
                      ____________________________________________________________
consensus AAGTGCGCTAGTCCCTGGTGGCATCCGTATCGGGGCACCAGCCATGACCACCAGAGGTTT
 
. : . : . : . : . : . :
rJMSF001L23+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF039E06+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF035D06+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF036E11+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF025M18+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF043C23+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMSF003J18+ CACCGAGAATGAATTCATGGCAGTCGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
rJMFF007O22+ CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
                      ____________________________________________________________
consensus CACCGAGAATGAATTCATGGCAGTTGCAGACTTCATTCACGAGGGAGTGCAAATCACTCT
 
. : . : . : . : . : . :
rJMSF001L23+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF039E06+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF035D06+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF036E11+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF025M18+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMFF043C23+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
rJMSF003J18+ CCGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCANGATTTCATGNAATTTGTTANGT
rJMFF007O22+ -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
                      ____________________________________________________________
consensus -CGAATCCAAGAAATTGGTGTCGGGTCCCAAGCTCCAAGATTTCATGAAATTTGTTACGT
 
. : . : . : . : . : . :
rJMSF001L23+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF039E06+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF035D06+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF036E11+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTNGAAGNTGTG
rJMFF025M18+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMFF043C23+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
rJMSF003J18+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGTGCTGCGCACAAGAGTTGAAGCTGTG
rJMFF007O22+ ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
                      ____________________________________________________________
consensus ACCCAGACTTTCCTTTGACGGATCAAGTTGCAGGT-CTGCGCACAAGAGTTGAAGCTGTG
 
. : . : . : . : . : . :
rJMSF001L23+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF039E06+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF035D06+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF036E11+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAANGCAANACACAAA
rJMFF025M18+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF043C23+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMSF003J18+ ACAACACNGTACCCATNGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
rJMFF007O22+ ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
                      ____________________________________________________________
consensus ACAACACAGTACCCATTGCCTGGGCTGTAAGCAATATAATGCAAGACACAAATTAGCGAG
 
. : . : . : . : . : . :
rJMSF001L23+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF039E06+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF035D06+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF025M18+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMFF043C23+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
rJMSF003J18+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAANTGAGTTGAGAAAGAT
rJMFF007O22+ TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
                      ____________________________________________________________
consensus TGAAAATGTAATATGAACGCAGCATCTCTTTTAAATCCTCAAAACTGAGTTGAGAAAGAT
 
. : . : . : . : . : . :
rJMSF001L23+ GCACAGTTTTGAACATTCTGATTTCTGAATT
rJMFF039E06+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATA
rJMFF035D06+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATA
rJMFF025M18+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATAT
rJMFF043C23+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
rJMSF003J18+ GCACAGTTTTGAACATTNTGATTTCTGAATTTGGAACTNCATATCATATATGATAAAGCN
rJMFF007O22+ GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
                      ____________________________________________________________
consensus GCACAGTTTTGAACATTCTGATTTCTGAATTTGGAACTTCATATCATATATGATAAAGCT
 
. : . : . : . : . : . :
rJMFF043C23+ TGAGAA
rJMSF003J18+ TGAGAA
rJMFF007O22+ TGAGAAACCAATATCTATGCTTTATACCTTTTGCTTCAATTATTATATTATAGTCATTTC
                      ____________________________________________________________
consensus TGAGAAACCAATATCTATGCTTTATACCTTTTGCTTCAATTATTATATTATAGTCATTTC