Contig 008131:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N16Sequence461000997 (33)ref|XP_009591976.1|2e-22PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]659008131 (6)ref|NP_001266156.1|1e-59uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFF013H14Sequence570000997 (33)ref|XP_009591976.1|2e-59PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]656008131 (6)ref|XP_009785001.1|2e-63PREDICTED: protein argonaute 4-like [Nicotiana sylvestris]
JMFF021G19Sequence390000997 (33)ref|XP_009591976.1|9e-20PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]637008131 (6)ref|NP_001266156.1|2e-48uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFS003C02Sequence519008131 (6)ref|NP_001266156.1|4e-47uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMSF033N16Sequence591000997 (33)ref|XP_009591976.1|3e-59PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]692008131 (6)ref|XP_009785001.1|7e-78PREDICTED: protein argonaute 4-like [Nicotiana sylvestris]
JMSF050F08Sequence671000997 (33)ref|XP_006362741.1|3e-75PREDICTED: protein argonaute 4-like [Solanum tuberosum]774008131 (6)gb|ACZ04920.1|3e-117argonaute 4-like protein [Pelargonium x hortorum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF050F08+ AG
                      ____________________________________________________________
consensus AG
 
. : . : . : . : . : . :
rJMSF050F08+ ATGATGGAATTATGAGGGAGCTATTGCTAGACTTTTATGTTAGTTCTGGGAAAAGGAAGC
                      ____________________________________________________________
consensus ATGATGGAATTATGAGGGAGCTATTGCTAGACTTTTATGTTAGTTCTGGGAAAAGGAAGC
 
. : . : . : . : . : . :
rJMSF050F08+ CTGACCAAATTATAATCTTCAGGGATGGTGTCAGTGAATCCCAATTCAATCAAGTTCTTA
                      ____________________________________________________________
consensus CTGACCAAATTATAATCTTCAGGGATGGTGTCAGTGAATCCCAATTCAATCAAGTTCTTA
 
. : . : . : . : . : . :
rJMSF050F08+ ACATTGAACTTGATCAGATCATTGAGGCTTGTAAATTTCTTGATGAGAAATGGTCGCCCA
rJMSF033N16+ ATGAGAAATGGTCGCCCA
                      ____________________________________________________________
consensus ACATTGAACTTGATCAGATCATTGAGGCTTGTAAATTTCTTGATGAGAAATGGTCGCCCA
 
. : . : . : . : . : . :
rJMSF050F08+ AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
rJMSF033N16+ AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
rJMFF013H14+ GTCTC
rJMFF004N16+ C
                      ____________________________________________________________
consensus AGTTTACGGTCATTGTTGCTCAGAAGAATCATCACACCAAGTTCTTCCAACCTGGGTCTC
 
. : . : . : . : . : . :
rJMSF050F08+ CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMSF033N16+ CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMFF013H14+ CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
rJMFF021G19+ GGACAATTATTGATAGTAAAGTTTGTCATCCGGAAAAACAAT
rJMFF004N16+ CTGATAATGTTCANCCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
                      ____________________________________________________________
consensus CTGATAATGTTCAACCTGGGACAATTATTGATAGTAAAGTTTGTCATCC-GAAAAACAAT
 
. : . : . : . : . : . :
rJMSF050F08+ GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
JMFS003C02- TTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMSF033N16+ GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF013H14+ GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF021G19+ GACTTTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
rJMFF004N16+ GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
                      ____________________________________________________________
consensus GAC-TTTTACTTGTGTGCTCATGCAGGAATGATTGGGACCACAAGACCAACACACTACCA
 
. : . : . : . : . : . :
rJMSF050F08+ TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
JMFS003C02- TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMSF033N16+ TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF013H14+ TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF021G19+ TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
rJMFF004N16+ TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
                      ____________________________________________________________
consensus TGTTCTTTATGACGAGGTTGGATTTTCAGCTGATGAACTTCAAGAACTTGTGCACAGCCT
 
. : . : . : . : . : . :
rJMSF050F08+ ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
JMFS003C02- ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMSF033N16+ ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF013H14+ ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF021G19+ ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
rJMFF004N16+ ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
                      ____________________________________________________________
consensus ATCCTATGTGTACCAAAAGAGCACCACTGCTGTATCTGTTGTTGCTCCTATTTGCTATGC
 
. : . : . : . : . : . :
rJMSF050F08+ TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
JMFS003C02- TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMSF033N16+ TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF013H14+ TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF021G19+ TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
rJMFF004N16+ TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
                      ____________________________________________________________
consensus TCATTTGGCTGCCACCCAGTTGGGACAGTGGATGAAATTTGAAGATACGTCCGAGACATC
 
. : . : . : . : . : . :
rJMSF050F08+ TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
JMFS003C02- TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMSF033N16+ TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF013H14+ TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF021G19+ TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
rJMFF004N16+ TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
                      ____________________________________________________________
consensus TTCAAGCCATGGTGGTGGGGGACCAAACGCAGGTCCAGCCCCAGTTCCTCAGTTGCCCCG
 
. : . : . : . : . : . :
rJMSF050F08+ ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
JMFS003C02- ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMSF033N16+ ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF013H14+ ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF021G19+ ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
rJMFF004N16+ ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
                      ____________________________________________________________
consensus ACTAGAAGAAAAGGTCTCGAGTTCAATGTTTTTCTGCTGAAGCGTGACGGGGTTCTGTCC
 
. : . : . : . : . : . :
rJMSF050F08+ CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
JMFS003C02- CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMSF033N16+ CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF013H14+ CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF021G19+ CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
rJMFF004N16+ CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
                      ____________________________________________________________
consensus CGATTTTTCAAAGTTGGAATGATGACTACTATGGATTGTATATATAGTTTTAGTATCCTA
 
. : . : . : . : . : . :
rJMSF050F08+ TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCA
JMFS003C02- TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMSF033N16+ TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF013H14+ TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF021G19+ TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
rJMFF004N16+ TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
                      ____________________________________________________________
consensus TGGAGGCTGTGAGACTGTTATAGCATAGCCTTTTGTGTTTGTTTTCGTAGTGCATCTGCA
 
. : . : . : . : . : . :
JMFS003C02- GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGG
rJMSF033N16+ GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF013H14+ GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF021G19+ GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
rJMFF004N16+ GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
                      ____________________________________________________________
consensus GACAGCAGACTTGAATCATGTTGCATGGCCGGATCAAACTTCAAACTGGTGGCGTTGCAT
 
. : . : . : . : . : . :
rJMSF033N16+ AGCCTTTTGTGTT
rJMFF013H14+ AGCCTTTTGTGTTTGTTTTTCTTTTAGT
rJMFF021G19+ AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCT
rJMFF004N16+ AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCTATCTA
                      ____________________________________________________________
consensus AGCCTTTTGTGTTTGTTTTTCTTTTAGTGTTTGTTCGGAATGAACTTAATTATCTATCTA