Contig 008123:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003B20Sequence552008123 (2)ref|XP_010252063.1|6e-28PREDICTED: RING-H2 finger protein ATL74 [Nelumbo nucifera] ref|XP_010252064.1| P750008123 (2)ref|XP_010252063.1|4e-28PREDICTED: RING-H2 finger protein ATL74 [Nelumbo nucifera] ref|XP_010252064.1| P

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF003B20- AATT
                      ____________________________________________________________
consensus AATT
 
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JMFF003B20- CAAACCACTAGTTGTTGCTTTCTCCTATGTTTCTGTCCTGCCGGGATTTCTTATTCGCCG
rJMFF003B20+ TTCTGTCCTGCCGGGATTTCTTATTCGCCG
                      ____________________________________________________________
consensus CAAACCACTAGTTGTTGCTTTCTCCTATGTTTCTGTCCTGCCGGGATTTCTTATTCGCCG
 
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JMFF003B20- GAACACCATGAGGGTAACGCCGTTACCGACCACGAACATGACGGCTCTAAACTACTCCGA
rJMFF003B20+ GAACACCATGAGGGTAACGCCGTTACCGACCACGAACATGACGGCTCTAAACTACTCCGA
                      ____________________________________________________________
consensus GAACACCATGAGGGTAACGCCGTTACCGACCACGAACATGACGGCTCTAAACTACTCCGA
 
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JMFF003B20- CGATCCCAAGCTGGACAGAGCCATGGTGGTGGTTCTTGCGTCTCTGCTAGCCGCGCTGCT
rJMFF003B20+ CGATCCCAAGCTGGACAGAGCCATGGTGGTGGTTCTTGCGTCTCTGCTAGCCGCGCTGCT
                      ____________________________________________________________
consensus CGATCCCAAGCTGGACAGAGCCATGGTGGTGGTTCTTGCGTCTCTGCTAGCCGCGCTGCT
 
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JMFF003B20- GCTTGTGCTCGCTGTGAATGCCATCGTCCGCTGCATTATCCGGCGCATTAGACGGCTTAG
rJMFF003B20+ GCTTGTGCTCGCTGTGAATGCCATCGTCCGCTGCATTATCCGGCGCATTAGACGGCTTAG
                      ____________________________________________________________
consensus GCTTGTGCTCGCTGTGAATGCCATCGTCCGCTGCATTATCCGGCGCATTAGACGGCTTAG
 
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JMFF003B20- CCCCCGGGTTCCGGTGCCCTCCGCCGCCCCTCTGCCGCCGCCGACGGCGGCGGGGCTGAA
rJMFF003B20+ CCCCCGGGTTCCGGTGCCCTCCGCCGCCCCTCTGCCGCCGCCGACGGCGGCGGGGCTGAA
                      ____________________________________________________________
consensus CCCCCGGGTTCCGGTGCCCTCCGCCGCCCCTCTGCCGCCGCCGACGGCGGCGGGGCTGAA
 
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JMFF003B20- GGAGGATGCTCTAGAGCAGATTCCGGTGGTGGTTTACAAGTCCGAGGTGGGTATCTTCGG
rJMFF003B20+ GGAGGATGCTCTAGAGCAGATTCCGGTGGTGGTTTACAAGTCCGAGGTGGGTATCTTCGG
                      ____________________________________________________________
consensus GGAGGATGCTCTAGAGCAGATTCCGGTGGTGGTTTACAAGTCCGAGGTGGGTATCTTCGG
 
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JMFF003B20- TACGGAATGTCCGATTTGCCTCACGGAGTTTAATGAAGGACAGAATTTGAGGCTGCTGCC
rJMFF003B20+ TACGGAATGTCCGATTTGCCTCACGGAGTTTAATGAAGGACAGAATTTGAGGCTGCTGCC
                      ____________________________________________________________
consensus TACGGAATGTCCGATTTGCCTCACGGAGTTTAATGAAGGACAGAATTTGAGGCTGCTGCC
 
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JMFF003B20- GAGGTGCAGCCATGGCTTCCATTTGAAGTGTATTGATCTGTGGCTTCTGTCTCACTCGTC
rJMFF003B20+ GAGGTGCAGCCATGGCTTCCATTTGAAGTGTATTGATCTGTGGCTTCTGTCTCACTCGTC
                      ____________________________________________________________
consensus GAGGTGCAGCCATGGCTTCCATTTGAAGTGTATTGATCTGTGGCTTCTGTCTCACTCGTC
 
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JMFF003B20- TTGCCCAACTTGTANGCGGCCATTGCTTGATGATACTCCATAAATCTGTTTGTANTTCAA
rJMFF003B20+ TTGCCCAACTTGTAGGCGGCCATTGCTTGATGATACTCCATAAATCTGTTTGTAGTTCAA
                      ____________________________________________________________
consensus TTGCCCAACTTGTAGGCGGCCATTGCTTGATGATACTCCATAAATCTGTTTGTAGTTCAA
 
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JMFF003B20- TGGTACAG
rJMFF003B20+ TGGTACAGTAGGCAGTACTGAAGAGTAGAGATCAAGGTTCGAATTTCGACGATAATAATG
                      ____________________________________________________________
consensus TGGTACAGTAGGCAGTACTGAAGAGTAGAGATCAAGGTTCGAATTTCGACGATAATAATG
 
. : . : . : . : . : . :
rJMFF003B20+ CTCTGAAGATTCAACCTTTTGGGAGAAAATACTCCATAAATCTCCTCTTTTACTTCCATT
                      ____________________________________________________________
consensus CTCTGAAGATTCAACCTTTTGGGAGAAAATACTCCATAAATCTCCTCTTTTACTTCCATT
 
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rJMFF003B20+ CAATTCTATTCAATCTTTTGTTTAGTCATGATTCAATGTTTCTTTTAGAATGTCTCTTTA
                      ____________________________________________________________
consensus CAATTCTATTCAATCTTTTGTTTAGTCATGATTCAATGTTTCTTTTAGAATGTCTCTTTA
 
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rJMFF003B20+ ACTTGTGGTGTCCTATGATGTTTTTTTAATTCATTTGAAGCAAATGCTTCTAATAATACA
                      ____________________________________________________________
consensus ACTTGTGGTGTCCTATGATGTTTTTTTAATTCATTTGAAGCAAATGCTTCTAATAATACA