| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002B05 | Sequence | 490 | 010807 (7) | ref|NP_001275054.1| | 1e-62 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 748 | 008119 (6) | emb|CBI22296.3| | 1e-65 | unnamed protein product [Vitis vinifera] |
| JMFF003F05 | Sequence | 516 | 010807 (7) | ref|NP_001275054.1| | 1e-69 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 679 | 008119 (6) | emb|CBI22296.3| | 8e-77 | unnamed protein product [Vitis vinifera] |
| JMFF005C12 | Sequence | 498 | 010807 (7) | ref|NP_001275054.1| | 6e-67 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 686 | 008119 (6) | emb|CBI22296.3| | 2e-77 | unnamed protein product [Vitis vinifera] |
| JMFF036M01 | Sequence | 490 | 010807 (7) | ref|NP_001275054.1| | 5e-70 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 749 | 008119 (6) | emb|CBI22296.3| | 1e-64 | unnamed protein product [Vitis vinifera] |
| JMFF047L20 | Sequence | 604 | 010807 (7) | ref|NP_001275054.1| | 2e-82 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 568 | 008119 (6) | emb|CBI22296.3| | 4e-40 | unnamed protein product [Vitis vinifera] |
| JMSF035L03 | Sequence | 699 | 010807 (7) | ref|NP_001275054.1| | 2e-99 | probable mitochondrial-processing peptidase subunit beta-like [Solanum tuberosu | 662 | 008119 (6) | emb|CBI22296.3| | 1e-77 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF003F05+ TA
rJMSF035L03+ TA
rJMFF005C12+ AGTCTA
rJMFF036M01+ TA
____________________________________________________________
consensus AGTCTA
. : . : . : . : . : . :
rJMFF003F05+ TGCAGTTGCAAAGCCTGATTGCTTGGATGATCTGGCATATT-CAATTATGTACGAAATTA
rJMSF035L03+ TGCAGTTGCAAAGCCTGATTGCTTGGATGATCTGGCATATT-CAATTATGTACGAAATTA
rJMFF005C12+ TGCAGTTGCAAAGCCTGATTGCTTGGATGATCTGGCATATT-CAATTATGTACGAAATTA
rJMFF036M01+ TGCAGTTGCAAAGCCTGATTGCTTGGATGATCTGGCATATTCCAATTATGTACGAAATTA
rJMFF002B05+ CTGGCATATT-CAATTATGTACGAAATTA
____________________________________________________________
consensus TGCAGTTGCAAAGCCTGATTGCTTGGATGATCTGGCATATT-CAATTATGTACGAAATTA
. : . : . : . : . : . :
rJMFF003F05+ GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTTGAAAT
rJMSF035L03+ GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTTGAAAT
rJMFF005C12+ GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTTGAAAT
rJMFF036M01+ GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTTGAAAT
rJMFF002B05+ GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTNGAAAT
____________________________________________________________
consensus GTAAGTTGTGCTATAGAGTTTCGGAGGCTGATGTGACTCGTGCACGTAACCAGTTGAAAT
. : . : . : . : . : . :
rJMFF003F05+ CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
rJMSF035L03+ CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
rJMFF005C12+ CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
rJMFF036M01+ CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
rJMFF047L20+ GGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
rJMFF002B05+ CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
____________________________________________________________
consensus CTTCTTTGCTGCTTCACATGGATGGAACCAGTCCTATTGCTGAAGATATTGGTCGTCAGC
. : . : . : . : . : . :
rJMFF003F05+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
rJMSF035L03+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
rJMFF005C12+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
rJMFF036M01+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
rJMFF047L20+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
rJMFF002B05+ TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGANGCCGTAG
____________________________________________________________
consensus TTCTTACATATGGCCGAAGAATACCATTTGCTGAATTATTTGCTAGGATTGATGCCGTAG
. : . : . : . : . : . :
rJMFF003F05+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
rJMSF035L03+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
rJMFF005C12+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
rJMFF036M01+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
rJMFF047L20+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
rJMFF002B05+ ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
____________________________________________________________
consensus ATGCGAGCACAATCAAACGTGTTGCAAACCGGTTTATATTTGATCGGGATGTTGCTATTT
. : . : . : . : . : . :
rJMFF003F05+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
rJMSF035L03+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
rJMFF005C12+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
rJMFF036M01+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
rJMFF047L20+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
rJMFF002B05+ CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
____________________________________________________________
consensus CAGCTGTGGGTCCTATCCAGAACTTACCCGATTACAACTGGTTCAGACGCAGAACCTACA
. : . : . : . : . : . :
rJMFF003F05+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
rJMSF035L03+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
rJMFF005C12+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
rJMFF036M01+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
rJMFF047L20+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
rJMFF002B05+ TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
____________________________________________________________
consensus TGCTCCGCTACTAGTTTCTCAATAAACTGGAGTTGTTACAAAATCACATTATCTCTGTGT
. : . : . : . : . : . :
rJMFF003F05+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
rJMSF035L03+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
rJMFF005C12+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
rJMFF036M01+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
rJMFF047L20+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
rJMFF002B05+ TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
____________________________________________________________
consensus TCAGAGCGGCATATTTCAATTCAAGATCAACTAGGGCTAACTCTCAAGTCTTCATGCTAT
. : . : . : . : . : . :
rJMFF003F05+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
rJMSF035L03+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
rJMFF005C12+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
rJMFF036M01+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
rJMFF047L20+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
rJMFF002B05+ TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
____________________________________________________________
consensus TCTTTTCGCCCTCTGCTTTTGTTTCCTGTAAAATTTTTCCAAGCAACGAAAATAAATAGC
. : . : . : . : . : . :
rJMFF003F05+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
rJMSF035L03+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
rJMFF005C12+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
rJMFF036M01+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
rJMFF047L20+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
rJMFF002B05+ TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
____________________________________________________________
consensus TTGCGTTCAGCAACATTATGTCAATCACAGGCCCGAACCAGATTTATTATTCCGAAAACT
. : . : . : . : . : . :
rJMFF003F05+ GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
rJMSF035L03+ GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGAC
rJMFF005C12+ GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
rJMFF036M01+ GATAGCATCCACAAATACTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
rJMFF047L20+ GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
rJMFF002B05+ GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
____________________________________________________________
consensus GATAGCATCCACAAATGCTGGTACAATTGAGTGTGTTCATCTGGTTTGGATAGAAGACAT
. : . : . : . : . : . :
rJMFF003F05+ GTAATTTTGCCTGATTT
rJMFF005C12+ GTAATTTTGCCTGATTT
rJMFF036M01+ GTAATTTTGCCTGATTTTCTTTAATGTATTCAGTGCTCCGGATTGTTGCAGAATTTGTCA
rJMFF047L20+ GTAATTTTGCCTGATTTTCTTTAATGTATTCAGTGCTCCGGATTGTTGCAG
rJMFF002B05+ GTAATTTTGCCTGATTTTCTTTAATGTATTCAGTGCTCCGGATTGTTGCAGAATTTGTCA
____________________________________________________________
consensus GTAATTTTGCCTGATTTTCTTTAATGTATTCAGTGCTCCGGATTGTTGCAGAATTTGTCA
. : . : . : . : . : . :
rJMFF036M01+ TATTGTCCCATGTGAATGTGCAATTCT
rJMFF002B05+ TATTGTCCCATGTGAATGTGCAATTCTGAGTGGTATAAATGACCATTTTGGATTATAGAT
____________________________________________________________
consensus TATTGTCCCATGTGAATGTGCAATTCTGAGTGGTATAAATGACCATTTTGGATTATAGAT