Contig 008107:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS053C02Sequence597008107 (5)
JMFS066G10Sequence616008107 (5)
JMSF005N10Sequence303008107 (5)
JMSF047F06Sequence702008107 (5)713015167ref|XP_010316349.1|2e-53PREDICTED: zinc finger protein NUTCRACKER isoform X2 [Solanum lycopersicum]
JMSF052F10Sequence518008107 (5)782002664 (10)ref|XP_006346222.1|1e-65PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047F06+ ACGCAATAACCTCCG
                      ____________________________________________________________
consensus ACGCAATAACCTCCG
 
. : . : . : . : . : . :
JMFS066G10+ TTCCGGGAAGATTTCGTTTTTTCTTGCTGGTTGCTTTCGGCGGCG
JMSF047F06+ CATCAGGATCTGGCATTCCGGGAAGATTTCGTTTTTTCTTGCTGGTTGCTTTCGGCGGCG
                      ____________________________________________________________
consensus CATCAGGATCTGGCATTCCGGGAAGATTTCGTTTTTTCTTGCTGGTTGCTTTCGGCGGCG
 
. : . : . : . : . : . :
JMFS066G10+ GCGCTGCTTGGTTCTCGGAGGAAGAAACGCTGGCTTCGCCGGACCCGGGGGAGTCGTTCT
JMFS053C02+ AACGCTGGCTTCGCCGGACCCGGGGGAGTCGTTCT
JMSF047F06+ GCGCTGCTTGGTTCTCGGAGGAAGAAACGCTGGCTTCGCCGGACCCGGGGGAGTCGTTCT
                      ____________________________________________________________
consensus GCGCTGCTTGGTTCTCGGAGGAAGAAACGCTGGCTTCGCCGGACCCGGGGGAGTCGTTCT
 
. : . : . : . : . : . :
JMFS066G10+ TATCGGCGTCAGTCCGCATATCTATGGAGTAGTTTGTGGTTCTTTAATTTGTAGCGGCTA
JMFS053C02+ TATCGGCGTCAGTCCGCATATCTATGGAGTAGTTTGTGGTTCTTTAATTTGTAGCGGCTA
JMSF047F06+ TATCGGCGTCAGTCCGCATATCTATGGAGTAGTTTGTGGTTCTTTAATTTGTAGCGGCTA
                      ____________________________________________________________
consensus TATCGGCGTCAGTCCGCATATCTATGGAGTAGTTTGTGGTTCTTTAATTTGTAGCGGCTA
 
. : . : . : . : . : . :
JMFS066G10+ AAAGGGGAAAATCATACGCATATCGTTGGCCAAAGTTGAAGATATGAACTTTCCGGCTAG
JMFS053C02+ AAAGGGGAAAATCATACGCATATCGTTGGCCAAAGTTGAAGATATGAACTTTCCGGCTAG
JMSF047F06+ AAAGGGGAAAATCATACGCATATCGTTGGCCAAAGTTGAAGATATGAACTTTCCGGCTAG
                      ____________________________________________________________
consensus AAAGGGGAAAATCATACGCATATCGTTGGCCAAAGTTGAAGATATGAACTTTCCGGCTAG
 
. : . : . : . : . : . :
JMFS066G10+ GGTTCCGATTGCAGCTAGCTTTCTGCGCTCGCAACCAGCTCCGATCAAGTTCTGACCGCA
JMFS053C02+ GGTTCCGATTGCAGCTAGCTTTCTGCGCTCGCAACCAGCTCCGATCAAGTTCTGACCGCA
JMSF047F06+ GGTTCCGATTGCAGCTAGCTTTCTGCGCTCGCAACCAGCTCCGATCAAGTTCTGACCGCA
                      ____________________________________________________________
consensus GGTTCCGATTGCAGCTAGCTTTCTGCGCTCGCAACCAGCTCCGATCAAGTTCTGACCGCA
 
. : . : . : . : . : . :
JMFS066G10+ ACCCAGATACTAAACCAAGCTACTTAGCAAAACCCTGTTTCGTAATCAGCTATGGAGAAC
JMFS053C02+ ACCCAGATACTAAACCAAGCTACTTAGCAAAACCCTGTTTCGTAATCAGCTATGGAGAAC
JMSF047F06+ ACCCAGATACTAAACCAAGCTACTTAGCAAAACCCTGTTTCGTAATCAGCTATGGAGAAC
JMSF052F10+ CTTAGCAAAACCCTGTTTNGTAATCAGCTATGGAGAAC
                      ____________________________________________________________
consensus ACCCAGATACTAAACCAAGCTACTTAGCAAAACCCTGTTTCGTAATCAGCTATGGAGAAC
 
. : . : . : . : . : . :
JMFS066G10+ AAAATTACCAGTCACCGGAAAACATTCCCCGGCGGTTCAGCTCAGCTTAACACCGTCGGA
JMFS053C02+ AAAATTACCAGTCACCGGAAAACATTCCCCGGCGGTTCAGCTCAGCTTAACACCGTCGGA
JMSF047F06+ AAAATTACCAGTCACCGGAAAACATTCCCCGGCGGTTCAGCTCAGCTTAACACCGTCGGA
JMSF005N10+ TCAGCTCAGCTTAACACCGTCGGA
JMSF052F10+ AAAATTACCAGTCACCGGAAAACATTCCCCGGCGGTTCAGNTCAGCTTAACNCCGTCGGA
                      ____________________________________________________________
consensus AAAATTACCAGTCACCGGAAAACATTCCCCGGCGGTTCAGCTCAGCTTAACACCGTCGGA
 
. : . : . : . : . : . :
JMFS066G10+ AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
JMFS053C02+ AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
JMSF047F06+ AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
JMSF005N10+ AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
JMSF052F10+ AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
                      ____________________________________________________________
consensus AAAAAACAAGTCCGAAAATTTCCAGCTTTACCCAAATGGGTTTCTAGCAAAAGTGAGATT
 
. : . : . : . : . : . :
JMFS066G10+ CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTCTATAGAACTTCTC
JMFS053C02+ CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTCTATAGAACTTCTC
JMSF047F06+ CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTCTATAGAACTTCTC
JMSF005N10+ CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTCTATAGAACTTCTC
JMSF052F10+ CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTNTATAGAACTTNTC
                      ____________________________________________________________
consensus CAGCTAAAATTCCAAGGCACCGAAAGTCCAGTTATCCCTACCGCTTCTATAGAACTTCTC
 
. : . : . : . : . : . :
JMFS066G10+ AGTCGCCGGAACCCCGGACCCGTTCTTGATCTTCCGGCGAAGTTTTTCAAGAACCCACCG
JMFS053C02+ AGTCGCCGGAACCCCGGACCCGTTCTTGATCTTCCGGCGAAGTTTTTCAAGAACCCACCG
JMSF047F06+ AGTCGCCGGAACCCCGGACCCGTTCTTGATCTTCCGGCGAAGTTTTTCAAGAACCCACCG
JMSF005N10+ AGTCGCCGGAACCCCGGACCCGTTCTTGATCTTCCGGCGAAGTTTTTCAAGAACCCACCG
JMSF052F10+ AGTCGCCGGAACCCCGGNCCCGTTNTTGATCTTCCGGCGAAGTTTTTCAAGAACCCNCCG
                      ____________________________________________________________
consensus AGTCGCCGGAACCCCGGACCCGTTCTTGATCTTCCGGCGAAGTTTTTCAAGAACCCACCG
 
. : . : . : . : . : . :
JMFS066G10+ GTTTTGGGCTGCTCGAAAATCTAGAGAGAG
JMFS053C02+ GTTTTGGGCTGCTCGAAAATCTAGAGAGAGAGAAAGAGGAGAAACTAGAGAGAGAACTGA
JMSF047F06+ GTTTTGGGCTGCTCGAAAATCTAGAGAGAGAGAGAGAGGAGAAACTAGAGAGAGAACTGA
JMSF005N10+ GTTTTGGGCTGCTCGAAAATCTAGAGAGAGAGAGAGAGGAGAAACTAGAGAGAGAACTGA
JMSF052F10+ GTTTTGGGCTGCTCGAAAATNTAGAGAGAGAGAGAGAGGAGAAACTAGAGAGAGAACTGA
                      ____________________________________________________________
consensus GTTTTGGGCTGCTCGAAAATCTAGAGAGAGAGAGAGAGGAGAAACTAGAGAGAGAACTGA
 
. : . : . : . : . : . :
JMFS053C02+ GGGACAGCAAGCTAGCAAAGTC
JMSF047F06+ GGGACAGCAAGCTAGCAAAGTC
JMSF005N10+ GGGACAGCAAGCTAGCAAAGTCCTTTGATTTGGGTGCT
JMSF052F10+ GGGACAGCAAGCTAGCAAAGTCCTTTGATTTGGGTGCTAATTCACTNTACTTTTTCAGAG
                      ____________________________________________________________
consensus GGGACAGCAAGCTAGCAAAGTCCTTTGATTTGGGTGCTAATTCACTNTACTTTTTCAGAG
 
. : . : . : . : . : . :
JMSF052F10+ CCTAAGAAAAAAAAAATTTCCGACATAATCAAAAAATTACGAGGTAATTAAAGGAGAGAT
                      ____________________________________________________________
consensus CCTAAGAAAAAAAAAATTTCCGACATAATCAAAAAATTACGAGGTAATTAAAGGAGAGAT
 
. : . : . : . : . : . :
JMSF052F10+ TAGAGTTATAAAAACGGCAATTAAAGATGAAAGCTCTCACCGGTCGGGCAGAGGTTCCCC
                      ____________________________________________________________
consensus TAGAGTTATAAAAACGGCAATTAAAGATGAAAGCTCTCACCGGTCGGGCAGAGGTTCCCC