Contig 008106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026G15Sequence547008106 (2)ref|XP_009763179.1|6e-39PREDICTED: CDT1-like protein a, chloroplastic [Nicotiana sylvestris]745001122 (2)gb|KDO68466.1|9e-56hypothetical protein CISIN_1g006819mg [Citrus sinensis]
JMSF052D18Sequence678008106 (2)ref|XP_009763179.1|4e-68PREDICTED: CDT1-like protein a, chloroplastic [Nicotiana sylvestris]897018363gb|KCW49939.1|7e-79hypothetical protein EUGRSUZ_K03401 [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF052D18+ TTAATACGAAGATCAGGC
                      ____________________________________________________________
consensus TTAATACGAAGATCAGGC
 
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JMSF052D18+ TTCATACAGCTCGTGCGTTCATCATGGACGAGGATCTTCGTAACCTCGATGGCTTCAGGT
                      ____________________________________________________________
consensus TTCATACAGCTCGTGCGTTCATCATGGACGAGGATCTTCGTAACCTCGATGGCTTCAGGT
 
. : . : . : . : . : . :
JMFF026G15+ AACACTCG
JMSF052D18+ AAAATAAACTTCAACTGAGCTAGATGGCTGTGAGAAAACCTCCTGTCGGTTAAACACTCG
                      ____________________________________________________________
consensus AAAATAAACTTCAACTGAGCTAGATGGCTGTGAGAAAACCTCCTGTCGGTTAAACACTCG
 
. : . : . : . : . : . :
JMFF026G15+ ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
JMSF052D18+ ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
                      ____________________________________________________________
consensus ATTTTGGGACTAATGTTTGTAAATGTTGTCTTTGATCCCTTCATTCGTAGCAGCCGGATA
 
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JMFF026G15+ GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
JMSF052D18+ GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
                      ____________________________________________________________
consensus GAACTATCCAAGCTATTGAAGAATTCACCCAAAATCTCGTACTTTTCCGGCAGCTTTGCT
 
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JMFF026G15+ GGACCGTCGGACTTCTTAGGCATTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
JMSF052D18+ GGACCGTCGGACTTCTTAGGCTTTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
                      ____________________________________________________________
consensus GGACCGTCGGACTTCTTAGGCTTTGCAGGCGGAGATTCAGGCTGGGAACCAATCTGCCCG
 
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JMFF026G15+ GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
JMSF052D18+ GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
                      ____________________________________________________________
consensus GCGGCGGAGCTCAAAAGTGGATCTGCTTGAGATGGCCGTTCCGGATCTGATTTCCGGAGC
 
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JMFF026G15+ TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
JMSF052D18+ TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
                      ____________________________________________________________
consensus TTTAGCGCCGCCTGTCGGACTTGTTTCAAGGAGAGCGCGGAGTTGCCGTTTCGACTCCGG
 
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JMFF026G15+ CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
JMSF052D18+ CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
                      ____________________________________________________________
consensus CGAGGAGCATTGACCGGCTTCTCAGGGGTCTTGGAGCTCCATGGATCCCGGTCCGCCGGA
 
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JMFF026G15+ GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
JMSF052D18+ GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
                      ____________________________________________________________
consensus GACTTAATCTCCGGCGAAGGATTTGGCTTCGAACTGGAATGCAGAACCTTCTTCGTCTTA
 
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JMFF026G15+ AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
JMSF052D18+ AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
                      ____________________________________________________________
consensus AACGATTCGAGCAACGACGACTCGGCGGAGTCCATTACAAAAATTCACTGTAAAACTCCG
 
. : . : . : . : . : . :
JMFF026G15+ TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGAT
JMSF052D18+ TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGATC
                      ____________________________________________________________
consensus TTAAGAAACGCTTCTTTATCTTCTTGTCGTTCTTGAGGCTGGGTTTCGGGGCAAGCGATC