Contig 008105:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031B20Sequence655008105 (4)ref|XP_009627088.1|2e-53PREDICTED: probable pectate lyase 5 [Nicotiana tomentosiformis]
JMSF042G06Sequence836008105 (4)ref|XP_009627088.1|1e-83PREDICTED: probable pectate lyase 5 [Nicotiana tomentosiformis]789012789 (3)ref|XP_009761365.1|377PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]
JMSF051B07Sequence690008105 (4)ref|XP_011024360.1|155PREDICTED: probable pectate lyase 13 isoform X4 [Populus euphratica]740012789 (3)ref|XP_009761366.1|365PREDICTED: probable pectate lyase 13 isoform X2 [Nicotiana sylvestris]
JMSF052C09Sequence703008105 (4)ref|XP_011024360.1|157PREDICTED: probable pectate lyase 13 isoform X4 [Populus euphratica]879012789 (3)ref|XP_009761365.1|359PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF042G06+                                                                    GGT
                      ____________________________________________________________
consensus                                                                      GGT
 
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JMSF042G06+           GGGGACACAGTTGTAAAATGTGCACGTTGTGGATGATGACGTTGCTGATGTACTGGAGGG
                      ____________________________________________________________
consensus             GGGGACACAGTTGTAAAATGTGCACGTTGTGGATGATGACGTTGCTGATGTACTGGAGGG
 
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JMSF042G06+           TAATGCAGCCGCCGCCGGTGATGTGGACGTNGGCGCCGCGCCCGTCCACGGTCTTGTAGC
                      ____________________________________________________________
consensus             TAATGCAGCCGCCGCCGGTGATGTGGACGTNGGCGCCGCGCCCGTCCACGGTCTTGTAGC
 
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JMSF042G06+           TGTTGAAGATGAGCTCGTGCTTCAGCTTGATGGTCATGTCGGCGGCGAAGATGATCCAGA
                      ____________________________________________________________
consensus             TGTTGAAGATGAGCTCGTGCTTCAGCTTGATGGTCATGTCGGCGGCGAAGATGATCCAGA
 
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JMSF042G06+           GGGGCTCCGTTTGGATCACGGCGTGCCGGAGCGTCCCCGGCTTCGGCTCTACCGTGTCCT
JMSF031B20+                            ACGGCGTGCCGGAGCGTCCCCGGCTTCGGCTCTACCGTGTCCT
JMSF051B07+                                   GCCGGAGCGTCCCCGGCTTCGGCTCTACCGTGTCCT
JMSF052C09+                                   GCCGGAGCGTCCCCGGCTTCGGCTCTACCGTGTCCT
                      ____________________________________________________________
consensus             GGGGCTCCGTTTGGATCACGGCGTGCCGGAGCGTCCCCGGCTTCGGCTCTACCGTGTCCT
 
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JMSF042G06+           CGTCGGAGGAGTCGGAGACTATGTAGATCTTGCCGCCTTTCCCGCCCATCGCCGCTTGCC
JMSF031B20+           CGTCGGAGGAGTCGGAGACTATGTAGATCTTGCCGCCTTTCCCGCCCATCGCCGTTTGCC
JMSF051B07+           CGTCGGAGGAGTCGGAGACTATGTAGATCTTGCCGCCTTTCCCGCCCATCGCCGCTTGCC
JMSF052C09+           CGTCGGAGGAGTCGGAGACTATGTAGATCTTGCCGCCTTTCCCGCCCATCGCCGCTTGCC
                      ____________________________________________________________
consensus             CGTCGGAGGAGTCGGAGACTATGTAGATCTTGCCGCCTTTCCCGCCCATCGCCGCTTGCC
 
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JMSF042G06+           CGAACCCAATGCCGCAGTCCGCCAGCCGCTGCCGGTTGCTCGCCCAGTCCCCTGCGCACC
JMSF031B20+           CGAACCCAATGCCGCAGTCCGCCAGCCGCTGCCGGTTGCTCGCCCAGTCCCCTGCGCACC
JMSF051B07+           CGAACCCAATGCCGCAGTCCGCCAGCCGCTGCCGGTTGCTCGCCCAGTCCCCTGCGCACC
JMSF052C09+           CGAACCCAATGCCGCAGTCCGCCAGCCGCTGCCGGTTGCTCGCCCAGTCCCCTGCGCACC
                      ____________________________________________________________
consensus             CGAACCCAATGCCGCAGTCCGCCAGCCGCTGCCGGTTGCTCGCCCAGTCCCCTGCGCACC
 
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JMSF042G06+           GCCAGCAGTCGTCGATGGGGTTTCCGGTCAGGCATTGGTCCTTCTCCGTCGTCGACACCA
JMSF031B20+           GCCAGCAGTCGTCGATGGGGTTTCCGGTCAGGCATTGGTCCTTCTCCGTCGTCGACACCA
JMSF051B07+           GCCAGCAGTCGTCGATGGGGTTTCCGGTCAGGCATTGGTCCTTCTCCGTCGTCGACACCA
JMSF052C09+           GCCAGCAGTCGTCGATGGGGTTTCCGGTCAGGCATTGGTCCTTCTCCGTCGTCGACACCA
                      ____________________________________________________________
consensus             GCCAGCAGTCGTCGATGGGGTTTCCGGTCAGGCATTGGTCCTTCTCCGTCGTCGACACCA
 
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JMSF042G06+           AGACCCTCCTCGAAACCGATTCATTAACTCTCCTCTGAACTTCGTGAACCACAGCTTCAG
JMSF031B20+           AGACCCTCCTCGAAACCGATTCATTAACTCTCCTCTGAACTTCGTGAACCACAGCTTCAG
JMSF051B07+           AGACCCTCCTCGAAACCGATTCATTAACTCTCCTCTGAACTTCGTGAACCACAGCTTCAG
JMSF052C09+           AGACCCTCCTCGAAACCGATTCATTAACTCTCCTCTGAACTTCGTGAACCACAGCTTCAG
                      ____________________________________________________________
consensus             AGACCCTCCTCGAAACCGATTCATTAACTCTCCTCTGAACTTCGTGAACCACAGCTTCAG
 
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JMSF042G06+           GGTAGGGGTGTTGATGGGGGAGAGTGAGGTTGAAGGCGGCGGCGCTGATAAACGGAGGAG
JMSF031B20+           GGTAGGGGTGTTGATGGGGGAGAGTGAGGTTGAAGGCGGCGGCGCTGATAAACGGAGGAG
JMSF051B07+           GGTAGGGGTGTTGATGGGGGAGAGTGAGGTTGAAGGCGGCGGCGCTGATAAACGGAGGAG
JMSF052C09+           GGTAGGGGTGTTGATGGGGGAGAGTGAGGTTGAAGGCGGCGGCGCTGATAAACGGAGGAG
                      ____________________________________________________________
consensus             GGTAGGGGTGTTGATGGGGGAGAGTGAGGTTGAAGGCGGCGGCGCTGATAAACGGAGGAG
 
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JMSF042G06+           ACAATGAGGTAAAGAGACAAAACAGGAAAATGGTGGTGGAACTGGGAAGAAACATCATCC
JMSF031B20+           ACAATGAGGTAAAGAGACAAAACAGGAAAATGGTGGTGGAACTGGGAAGAAACATCATCC
JMSF051B07+           ACAATGAGGTAAAGAGACAAAACAGGAAAATGGTGGTGGAACTGGGAAGAAACATCATCC
JMSF052C09+           ACAATGAGGTAAAGAGACAAAACAGGAAAATGGTGGTGGAACTGGGAAGAAACATCATCC
                      ____________________________________________________________
consensus             ACAATGAGGTAAAGAGACAAAACAGGAAAATGGTGGTGGAACTGGGAAGAAACATCATCC
 
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JMSF042G06+           TTGGATGAACAATCAGAAGGTTGTTGAAACTCCAGATGTTTTGCTCAATTGTTCATGAAT
JMSF031B20+           TTGGATGAACAATCAGAAGGTTGTTGAAACTCCAGATGTTTTGCTCAATTGTTCATGAAT
JMSF051B07+           TTGGATGAACAATCAGAAGGTTGTTGAAACTCCAGATGTTTTGCTCAATTGTTCATGAAT
JMSF052C09+           TTGGATGAACAATCAGAAGGTTGTTGAAACTCCAGATGTTTTGCTCAATTGTTCATGAAT
                      ____________________________________________________________
consensus             TTGGATGAACAATCAGAAGGTTGTTGAAACTCCAGATGTTTTGCTCAATTGTTCATGAAT
 
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JMSF042G06+           GTTTGCTAAAGGTATGGGAGAATGTCGAGTTGCTTAAATAATCTAATCTATACTCAATAA
JMSF031B20+           GTTTGCTAAAGGTATGGGAGAATGTCGAGTTGCTTAAATAATCTAATCTATACTCAATAA
JMSF051B07+           GTTTGCTAAAGGTATGGGAGAATGTCGAGTTGCTTAAATAATCTAATCTATACTCAATAA
JMSF052C09+           GTTTGCTAAAGGTATGGGAGAATGTCGAGTTGCTTAAATAATCTAATCTATACTCAATAA
                      ____________________________________________________________
consensus             GTTTGCTAAAGGTATGGGAGAATGTCGAGTTGCTTAAATAATCTAATCTATACTCAATAA
 
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JMSF042G06+           AAATAAAATAAAATCAATCTTTAATGGACTAATTGGTGAAGAGGAGATTTTGGAGGTGGA
JMSF031B20+           AAATAAAATAAAATCAATCTTTAATGGACTAATTGGTGAAGAGGAGATTTTGGAGGTGGA
JMSF051B07+           AAATAAAATAAAATCAATCTTTAATGGACTAATTGGTGAAGAGGAGATTTTGGAGGTGGA
JMSF052C09+           AAATAAAATAAAATCAATCTTTAATGGACTAATTGGTGAAGAGGAGATTTTGGAGGTGGA
                      ____________________________________________________________
consensus             AAATAAAATAAAATCAATCTTTAATGGACTAATTGGTGAAGAGGAGATTTTGGAGGTGGA
 
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JMSF042G06+           AGAGAAGGCCGAAGAGGAGAGAGACTGTTTTCTCTGTTCTCTCAGCTTCTTC        
JMSF031B20+           AGAGAAGGCCGAAGAGGAGAGAGACTGTTTTCTCTGTTCTCTCAGCTTCTTCTTCTTCTT
JMSF051B07+           AGAGAAGGCCGAAGAGGAGAGAGACTGTTTTCTCTGTTCTCTCAGCTTCTTCTTCTTCTT
JMSF052C09+           AGAGAAGGCCGAAGAGGAGAGAGACTGTTTTCTCTGTTCTCTCAGCTTCTTCTTCTTCTT
                      ____________________________________________________________
consensus             AGAGAAGGCCGAAGAGGAGAGAGACTGTTTTCTCTGTTCTCTCAGCTTCTTCTTCTTCTT
 
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JMSF031B20+           CTTCC                                                       
JMSF051B07+           CTTCCTCTCTCTCTCTCTAAAGTTCCTTAGATTAAATGAAACTAGTTTGGATT       
JMSF052C09+           CTTCCTCTCTCTCTCTCTAAAGTTCCTTAGATTAAATGAAACTAGTTTGGATTTTCAGCC
                      ____________________________________________________________
consensus             CTTCCTCTCTCTCTCTCTAAAGTTCCTTAGATTAAATGAAACTAGTTTGGATTTTCAGCC