| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS115B12 | Sequence | 627 | 008097 (3) | gb|ABO15685.1| | 1e-51 | NBS-NBS-LRR type disease resistance protein [Ipomoea batatas] | |||||
| JMSF045C19 | Sequence | 770 | 008097 (3) | gb|ABO15685.1| | 1e-37 | NBS-NBS-LRR type disease resistance protein [Ipomoea batatas] | 813 | 014100 (2) | ref|XP_011465090.1| | 79.7 | PREDICTED: disease resistance protein RPM1-like [Fragaria vesca subsp. vesca] |
| JMSF051B16 | Sequence | 625 | 008097 (3) | gb|ABO15685.1| | 8e-39 | NBS-NBS-LRR type disease resistance protein [Ipomoea batatas] | 723 | 014100 (2) | ref|XP_011465090.1| | 165 | PREDICTED: disease resistance protein RPM1-like [Fragaria vesca subsp. vesca] |
This contig is upended
. : . : . : . : . : . :
JMSF045C19+ CCCACCATCATTGCTCTNTAATTGGTTATTGAGGTTGCGCTGGA
____________________________________________________________
consensus CCCACCATCATTGCTCTNTAATTGGTTATTGAGGTTGCGCTGGA
. : . : . : . : . : . :
JMSF045C19+ ATCTTTCCCATTCTTCAATGCTCTCACTCTTNGTAGCCAAAACCCCAGCTATCACCACAA
____________________________________________________________
consensus ATCTTTCCCATTCTTCAATGCTCTCACTCTTNGTAGCCAAAACCCCAGCTATCACCACAA
. : . : . : . : . : . :
JMSF045C19+ TTGCTAGTGGTAGACCACCACATCTCTTTAAGATAGTTTTAGAAATGTTCACCAAGTGTT
____________________________________________________________
consensus TTGCTAGTGGTAGACCACCACATCTCTTTAAGATAGTTTTAGAAATGTTCACCAAGTGTT
. : . : . : . : . : . :
JMFS115B12+ CAGATCCGAGTCTTTTAGCAAAAGGGCATCC
JMSF045C19+ GAGGGCACGAATCACCTAAGAATGTCTTTCAGATCCGAGTCTTTTAGCAAAAGGGCATCC
JMSF051B16+ CGAGTCTTTTAGCAAAAGGGCATCC
____________________________________________________________
consensus GAGGGCACGAATCACCTAAGAATGTCTTTCAGATCCGAGTCTTTTAGCAAAAGGGCATCC
. : . : . : . : . : . :
JMFS115B12+ CTTCGGCCATCATACACCCTTTTGTTGCTGTTGTGGATAGTGTGATCAGAGGTTGTTAAC
JMSF045C19+ CTTCGGCCATCATACACCCTTTTGTTGCTGTTGTGGATAGTGTGATCAGAGGTTGTTAAC
JMSF051B16+ CTTCGGCCATCATACACCCTTTTGTTGCTGTTGTGGATAGTGTGATCAGAGGTTGTTAAC
____________________________________________________________
consensus CTTCGGCCATCATACACCCTTTTGTTGCTGTTGTGGATAGTGTGATCAGAGGTTGTTAAC
. : . : . : . : . : . :
JMFS115B12+ AACAACCTTGGCTGTTCCTGAGAGATGTTGTTGACTCTGGCCTTGATCCTTCGCAGTTCA
JMSF045C19+ AACAACCTTGGCTGTTCCTGAGAGATGTTGTTGACTCTGGCCTTGATCCTTCGCAGTTCA
JMSF051B16+ AACAACCTTGGCTGTTCCTGAGAGATGTTGTTGACTCTGGCCTTGATCCTTCGCAGTTCA
____________________________________________________________
consensus AACAACCTTGGCTGTTCCTGAGAGATGTTGTTGACTCTGGCCTTGATCCTTCGCAGTTCA
. : . : . : . : . : . :
JMFS115B12+ CGAGCAAGCCTTCGCCGAGCTCTCAAGTTCTTGACGGAAGTGTATTTGTTCTTGATCCTA
JMSF045C19+ CGAGCAAGCCTTCGCCGAGCTCTCAAGTTCTTGACGGAAGTGTATTTGTTCTTGATCCTA
JMSF051B16+ CGAGCAAGCCTTCGCCGAGCTCTCAAGTTCTTGACGGAAGTGTATTTGTTCTTGATCCTA
____________________________________________________________
consensus CGAGCAAGCCTTCGCCGAGCTCTCAAGTTCTTGACGGAAGTGTATTTGTTCTTGATCCTA
. : . : . : . : . : . :
JMFS115B12+ TTGTGCAACCCTCCATTGGTCTGGCTACCTCCAAAGCGGAACTGGAATTCGTCAAGAACA
JMSF045C19+ TTGTGCAACCCTCCATTGGTCTGGCTACCTCCAAAGCGGAACTGGAATTCGTCAAGAACA
JMSF051B16+ TTGTGCAACCCTCCATTGGTCTGGCTACCTCCAAAGCGGAACTGGAATTCGTCAAGAACA
____________________________________________________________
consensus TTGTGCAACCCTCCATTGGTCTGGCTACCTCCAAAGCGGAACTGGAATTCGTCAAGAACA
. : . : . : . : . : . :
JMFS115B12+ TCTTCAGTGTCATAAACCAGCTCCCGGATTATCTTCACCCATGCTTGAACTTGAGGATCA
JMSF045C19+ TCTTCAGTGTCATAAACCAGCTCCCGGATTATCTTCACCCATGCTTGAACTTGAGGATCA
JMSF051B16+ TCTTCAGTGTCATAAACCAGCTCCCGGATTATCTTCACCCATGCTTGAACTTGAGGATCA
____________________________________________________________
consensus TCTTCAGTGTCATAAACCAGCTCCCGGATTATCTTCACCCATGCTTGAACTTGAGGATCA
. : . : . : . : . : . :
JMFS115B12+ ATTTCTTCCCTCTCGTCCGCAACTCTCAAAACCGCCGTCAAACGATGGAAAGCATTCTCC
JMSF045C19+ ATTTCTTCCCTCTCGTCCGCAACTCTCAAAACCGCCGTCAAACGATGGAAAGCATTCTCC
JMSF051B16+ ATTTCTTCCCTCTCGTCCGCAACTCTCAAAACCGCCGTCAAACGATGGAAAGCATTCTCC
____________________________________________________________
consensus ATTTCTTCCCTCTCGTCCGCAACTCTCAAAACCGCCGTCAAACGATGGAAAGCATTCTCC
. : . : . : . : . : . :
JMFS115B12+ ACATCTTGCGCATCATCTCTAATCCCTCCCAAGAACGAGTACTCTTCACGGATCAGCACT
JMSF045C19+ ACATCTTGCGCATCATCTCTAATCCCTCCCAAGAACGAGTACTCTTCACGGATCAGCACT
JMSF051B16+ ACATCTTGCGCATCATCTCTAATCCCTCCCAAGAACGAGTACTCTTCACGGATCAGCACT
____________________________________________________________
consensus ACATCTTGCGCATCATCTCTAATCCCTCCCAAGAACGAGTACTCTTCACGGATCAGCACT
. : . : . : . : . : . :
JMFS115B12+ GAGAGTTGGCCCAATACAAACGTTACAGCAGCCTCCGCCATTGGTACAGATCGAAACTTC
JMSF045C19+ GAGAGTTGGCCCAATACAAACGTTACAGCAGCCTCCGCCATTGGTACAGATCGAAACTTC
JMSF051B16+ GAGAGTTGGCCCAATACAAACGTTACAGCAGCCTCCGCCATTGGTACAGATCGAAACTTC
____________________________________________________________
consensus GAGAGTTGGCCCAATACAAACGTTACAGCAGCCTCCGCCATTGGTACAGATCGAAACTTC
. : . : . : . : . : . :
JMFS115B12+ GATGGCTTGTTAACTTCACCGGCGAAGAATT
JMSF045C19+ GATGGCTTGTTAACTTCACCGGCGAAGAATTGGAGTGCTCAAACAGGATATGATTTTAGA
JMSF051B16+ GATGGCTTGTTAACTTCACCGGCGAAGAATTGGAGTGCTCAAACAGGATATGATTTTAGA
____________________________________________________________
consensus GATGGCTTGTTAACTTCACCGGCGAAGAATTGGAGTGCTCAAACAGGATATGATTTTAGA
. : . : . : . : . : . :
JMSF045C19+ GCGC
JMSF051B16+ GCGCAAAATGAAATGTTTTTCTTTATCTCTTATTTTGTATGGGCGGTAGTTAAGCCGTGC
____________________________________________________________
consensus GCGCAAAATGAAATGTTTTTCTTTATCTCTTATTTTGTATGGGCGGTAGTTAAGCCGTGC