clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003C22 | Sequence | 222 | 008093 (11) | gb|ADZ29096.1| | 3e-18 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 724 | 001233 (12) | gb|ADZ29096.1| | 6e-105 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMFF025P04 | Sequence | 503 | 008093 (11) | gb|ADZ29096.1| | 4e-82 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 689 | 001233 (12) | gb|ADZ29096.1| | 1e-108 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMFF036O22 | Sequence | 581 | 008093 (11) | gb|ADZ29096.1| | 3e-102 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 707 | 001233 (12) | gb|ADZ29096.1| | 4e-101 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMFF049B14 | Sequence | 618 | 008093 (11) | gb|ADZ29096.1| | 7e-110 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 627 | 001233 (12) | gb|AFK38815.1| | 2e-47 | unknown [Lotus japonicus] |
JMFF049C07 | Sequence | 481 | 008093 (11) | gb|ADZ29096.1| | 5e-80 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 409 | 001233 (12) | |||
JMFS008C07 | Sequence | 614 | 008093 (11) | gb|ADZ29096.1| | 2e-117 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | |||||
JMSF009J18 | Sequence | 382 | 008093 (11) | gb|ADZ29096.1| | 3e-40 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 687 | 001233 (12) | gb|ADZ29096.1| | 4e-106 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMSF016A08 | Sequence | 421 | 008093 (11) | gb|ADZ29096.1| | 7e-69 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 745 | 001233 (12) | gb|ADZ29096.1| | 8e-119 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMSF026P17 | Sequence | 664 | 008093 (11) | gb|ADZ29096.1| | 3e-128 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 741 | 001233 (12) | gb|ADZ29096.1| | 2e-117 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMSF041M18 | Sequence | 815 | 008093 (11) | gb|ADZ29096.1| | 4e-159 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 790 | 001233 (12) | gb|ADZ29096.1| | 1e-140 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
JMSF050N11 | Sequence | 652 | 008093 (11) | gb|ADZ29096.1| | 2e-116 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] | 770 | 001233 (12) | gb|ADZ29096.1| | 7e-120 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
JMSF041M18+ CAATGATGTATTTTCCTGCAAATGATGCAGTAGCA
____________________________________________________________
consensus CAATGATGTATTTTCCTGCAAATGATGCAGTAGCA
. : . : . : . : . : . :
JMSF041M18+ ACAGTTTCCTCGTGAGAATATTTACCATGGATAATGGAGGTATATTCTCCCTTCTTGTGC
____________________________________________________________
consensus ACAGTTTCCTCGTGAGAATATTTACCATGGATAATGGAGGTATATTCTCCCTTCTTGTGC
. : . : . : . : . : . :
JMSF026P17+ ATGGGCAGGTTGTATCAACTATCTGTACA
JMSF041M18+ TTTTCAACAGAATTCCAAACCTTCGACACCCATGGGCAGGTTGTATCAACTATCTGTACA
____________________________________________________________
consensus TTTTCAACAGAATTCCAAACCTTCGACACCCATGGGCAGGTTGTATCAACTATCTGTACA
. : . : . : . : . : . :
JMFS008C07+ TTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
JMSF026P17+ TTCTTTTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
JMSF041M18+ TTCTTTTCACTCAAAGTCAACATCTCATCCACTCTAGCCCCAAAAGCAGGTAAAACCACA
JMFF049B14+ CATCCACACTAGCCNCAAAAGCAGGTAAAACCACA
JMSF050N11+ ACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
____________________________________________________________
consensus TTCTTTTCACTCAAAGTCAACATCTCATCCACACTAGCCCCAAAAGCAGGTAAAACCACA
. : . : . : . : . : . :
JMFS008C07+ ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF026P17+ ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF041M18+ ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMFF049B14+ ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMFF036O22+ CAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
JMSF050N11+ ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
____________________________________________________________
consensus ACATCACCCTTGTCAACAACATCAAAAATTTTATTTCCTTGATTCACAGGGATATTCTTA
. : . : . : . : . : . :
JMFS008C07+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMSF026P17+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMSF041M18+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMFF049B14+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGTGGTTGTGTATAATCTCATTAGTGAGC
JMFF049C07+ TATAATCTCATTAGTGAGC
JMFF036O22+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
JMFF025P04+ GTGTATAATCTCATTAGTGAGC
JMSF050N11+ ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
____________________________________________________________
consensus ACTTCCATCTCCTCTAGGCGCTTATTCACTGTGGGGTTGTGTATAATCTCATTAGTGAGC
. : . : . : . : . : . :
JMFS008C07+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF026P17+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF041M18+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF049B14+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF049C07+ CAAATGTNTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF016A08+ GCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF036O22+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMFF025P04+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
JMSF050N11+ CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
____________________________________________________________
consensus CAAATGTTTTCTGTAGGAAATTGTTTTCTTGCTTCATATGCAATCTGGACGGCTCGCTCA
. : . : . : . : . : . :
JMFS008C07+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF026P17+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF041M18+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF049B14+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF049C07+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF016A08+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF009J18+ TCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF036O22+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMFF025P04+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
JMSF050N11+ ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
____________________________________________________________
consensus ACCCCCCAGCAGAAACCATAGGCTTCTGCAAGCTTCACAGTAACATTGCCCCATGTATAT
. : . : . : . : . : . :
JMFS008C07+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF026P17+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF041M18+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF049B14+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF049C07+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF016A08+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF009J18+ TCATAGCCATTGTCCTTCAACTT-TTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF036O22+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMFF025P04+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
JMSF050N11+ TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
____________________________________________________________
consensus TCATAGCCATTGTCCTTCAACTTCTTTATAATATCACTAGTATATTCGCGATTCATGAGC
. : . : . : . : . : . :
JMFS008C07+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF026P17+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF041M18+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF049B14+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF049C07+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF016A08+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF009J18+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF003C22+ CTTCTAGTCAAG
JMFF036O22+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMFF025P04+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
JMSF050N11+ TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
____________________________________________________________
consensus TCAAGAGTGGCCTCTTTGTGTCCAAAACCCCTGCGATTGTAATTGGCGCTTCTAGTCAAG
. : . : . : . : . : . :
JMFS008C07+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF026P17+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF041M18+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF049B14+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF049C07+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF016A08+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF009J18+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF003C22+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF036O22+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMFF025P04+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
JMSF050N11+ TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
____________________________________________________________
consensus TTCTTCCGGAAAGTCTTAGCATCGAAATCCGAATCAACGGTGGCCGACGAGGAGGAAGAG
. : . : . : . : . : . :
JMFS008C07+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF026P17+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF041M18+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF049B14+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF049C07+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF016A08+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF009J18+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF003C22+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF036O22+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMFF025P04+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
JMSF050N11+ GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
____________________________________________________________
consensus GAATCGGCTTCTCCGGTGGAGCACCGGATTGAGAGCGGCTTCCGAAGCTGGAAGATCCGA
. : . : . : . : . : . :
JMFS008C07+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF026P17+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF041M18+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF049B14+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF049C07+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF016A08+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF009J18+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF003C22+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF036O22+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMFF025P04+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
JMSF050N11+ GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
____________________________________________________________
consensus GGCTGCGGCAATGAGATGGCCGTACGAGTTGCTAGACAAGAGAATTGCAGAGGAATCGCC
. : . : . : . : . : . :
JMFS008C07+ ATTTCTGTAGACAGAGAAA
JMSF026P17+ ATTTCTGTAGACAGAGAAATGAGAAGTC
JMSF041M18+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTT
JMFF049B14+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGT
JMFF049C07+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGT
JMSF016A08+ ATTTCTGTAGACAGAGAAATGAGAAGTCGC
JMSF009J18+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGT
JMFF003C22+ ATTTCTGTAGACAGAGAAATGAGAAGTCGC
JMFF036O22+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGG
JMFF025P04+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGG
JMSF050N11+ ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTTAGTTCC
____________________________________________________________
consensus ATTTCTGTAGACAGAGAAATGAGAAGTCGCACGTTAAGCAGTGCGTATGGTCTTAGTTCC