Contig 008090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005D02Sequence372008090 (3)
JMSF039L02Sequence658008090 (3)ref|XP_003516943.1|181PREDICTED: uncharacterized protein LOC100780899 [Glycine max]847002945 (3)gb|KJB17031.1|7e-103hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth
JMSF050F09Sequence677008090 (3)ref|XP_003516943.1|174PREDICTED: uncharacterized protein LOC100780899 [Glycine max]738002945 (3)gb|KJB17031.1|7e-97hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF039L02+ CTGAGATTATTCT
                      ____________________________________________________________
consensus CTGAGATTATTCT
 
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JMSF039L02+ TGGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
JMSF050F09+ GGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
                      ____________________________________________________________
consensus TGGGCTGAGAGCCAATGAAAGGGGCACTTTGTTGTACCAAGGGCAGGGAAAGCTCCGAGA
 
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JMSF039L02+ CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
JMSF050F09+ CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
                      ____________________________________________________________
consensus CCCTATCAATTTTGCTCCATAAAATTCTTCGGGCACCCCTTCATGAGTTGTCACAACCAT
 
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JMSF039L02+ AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
JMSF050F09+ AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
                      ____________________________________________________________
consensus AACCTCATCTCCCATTTCCCGCAGATACTTGATGAAATTCTGGAACCGGTTCTTATATCC
 
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JMSF039L02+ AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
JMSF050F09+ AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
                      ____________________________________________________________
consensus AGACACATAAGCGAAAGGGGAGGGCTCAACAAAGAGAGCAATGCGTCTAGGTTTTGAAGT
 
. : . : . : . : . : . :
JMSF039L02+ CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
JMSF005D02+ CTCTGTACTCTGTAAT
JMSF050F09+ CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
                      ____________________________________________________________
consensus CACCTCTGATTCAATCACGGGAGGAGGGCTCTCCTCCTCTTCTTCTCTGTACTCTGTAAT
 
. : . : . : . : . : . :
JMSF039L02+ GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
JMSF005D02+ GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
JMSF050F09+ GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
                      ____________________________________________________________
consensus GGTCATATTGCTAGAGGCGGCAACAAAGAAGGGTCTTTGCCTATTCTTCAAAGACCCAGA
 
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JMSF039L02+ CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
JMSF005D02+ CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
JMSF050F09+ CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
                      ____________________________________________________________
consensus CTTTATGCAAAAGGGTTTTGCTCTTGAAGCAGAAAAGCAAGAAAATTTAAGGGAATGGGT
 
. : . : . : . : . : . :
JMSF039L02+ AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
JMSF005D02+ AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
JMSF050F09+ AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
                      ____________________________________________________________
consensus AGGTATAGATAAAGAACATGAAGAAGAAGCCGAAGAAGAAGAAGAGGTAGATTGGGAACA
 
. : . : . : . : . : . :
JMSF039L02+ GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
JMSF005D02+ GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
JMSF050F09+ GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
                      ____________________________________________________________
consensus GAAAGGGGAAGAGAAAGAAGGATTTACATACAGAGAAGCGGACATGATGGTGGGTTGTCT
 
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JMSF039L02+ GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
JMSF005D02+ GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
JMSF050F09+ GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
                      ____________________________________________________________
consensus GAATGGTGTTAAATATAAAGTAGTATATCAACTAGTGAAATGTTGGAGAAGAGACCGGCT
 
. : . : . : . : . : . :
JMSF039L02+ CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTAC
JMSF005D02+ CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTG
JMSF050F09+ CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTGCAAACC
                      ____________________________________________________________
consensus CTGAGGGGCCATGGAAGGGACTCTCCGAATGGATATTCTCTTACAGAGGGGGTGCAAACC