Contig 008075:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016J21Sequence240008075 (3)ref|XP_007161077.1|2e-18hypothetical protein PHAVU_001G040900g [Phaseolus vulgaris] gb|ESW33071.1| hypot733008075 (3)ref|XP_004244513.1|2e-58PREDICTED: enhancer of rudimentary homolog [Solanum lycopersicum] ref|XP_0063570
JMSF048L24Sequence670008075 (3)ref|XP_004244513.1|2e-62PREDICTED: enhancer of rudimentary homolog [Solanum lycopersicum] ref|XP_0063570698009667 (4)ref|XP_010315125.1|4e-99PREDICTED: LOW QUALITY PROTEIN: dicarboxylate transporter 2.1, chloroplastic-li

Alignment

This contig is upended


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rJMSF016J21-                                                  AAGTTGGGCATTCATTATAC
                      ____________________________________________________________
consensus                                                     AAGTTGGGCATTCATTATAC
 
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rJMSF016J21-          AAGCCAACACAAGCCTAAGATCCAGTGGTTGGACGAGATACAAACTAATAGGGAAAGTAA
JMSF048L24+                                                             GGGAAAGTAA
                      ____________________________________________________________
consensus             AAGCCAACACAAGCCTAAGATCCAGTGGTTGGACGAGATACAAACTAATAGGGAAAGTAA
 
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rJMSF016J21-          CAGTCAACTTCCATCTGATGCTGCAAATAGTAGGCTATGTGCATTAAGATTTAAGAAAGA
JMSF048L24+           CAGTCAACTTCCATCTGATGCTGCAAATAGTAGGCTATGTGCATTAAGATTTAAGAAAGA
                      ____________________________________________________________
consensus             CAGTCAACTTCCATCTGATGCTGCAAATAGTAGGCTATGTGCATTAAGATTTAAGAAAGA
 
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rJMSF016J21-          AACTACAGTAATTGATGCATGATAAGAAGAAACTACAGTAATTGATGCATGATAAGAGTA
JMSF048L24+           AACTACAGTAATTGATGCATGATAAGAAGAAACTACAGTAATTGATGCATGATAAGAGTA
                      ____________________________________________________________
consensus             AACTACAGTAATTGATGCATGATAAGAAGAAACTACAGTAATTGATGCATGATAAGAGTA
 
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rJMSF016J21-          TTTTGATCAAAGATCTGCACAGCTGTTAACAGCATTCACTATACCAATTTCTCTTCATAG
JMSF048L24+           TTTTGATCAAAGATCTGCACAGCTGTTAACAGCATTCACTATACCAATTTCTCTTCATAG
                      ____________________________________________________________
consensus             TTTTGATCAAAGATCTGCACAGCTGTTAACAGCATTCACTATACCAATTTCTCTTCATAG
 
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rJMSF016J21-          TAGCCAATATGATTGCATATGGAGGATGGAGACTATCATTTCATATACCATATCAGTTTG
JMSF048L24+           TAGCCAATATGATTGCATATGGAGGATGGAGACTATCATTTCATATACCATATCAGTTTG
                      ____________________________________________________________
consensus             TAGCCAATATGATTGCATATGGAGGATGGAGACTATCATTTCATATACCATATCAGTTTG
 
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rJMSF016J21-          AGGCCAA-TTTTTCAAATGTTGCAACGTCTTCTGTTTTATCCACTGCCGATCGTAAGGCA
JMSF048L24+           AGGCCAATTTTTTCAAATGTTGCAACGTCTTCTGTTTTATCCACTGCCGATCGTAAGGCA
                      ____________________________________________________________
consensus             AGGCCAATTTTTTCAAATGTTGCAACGTCTTCTGTTTTATCCACTGCCGATCGTAAGGCA
 
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rJMSF016J21-          AGTACGCCTGAATTGAGTGATCATAGACTAGTGCACTCATGTCTGCAAGTCCATCAATAA
JMSF048L24+           AGTACGCCTGAATTGAGTGATCATAGACTAGTGCACTCATGTCTGCAAGTCCATCAATAA
                      ____________________________________________________________
consensus             AGTACGCCTGAATTGAGTGATCATAGACTAGTGCACTCATGTCTGCAAGTCCATCAATAA
 
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JMSF016J21+                                                                 CCTTCA
rJMSF016J21-          AATTGTAAAGATCAGAGATATCATAAGAGATGTTTCTTATAGCTGGGTTTAACTCCTTCA
JMSF048L24+           AATTGTAAAGATCAGAGATATCATAAGAGATGTTTCTTATAGCTGGGTTTAACTCCTTCA
                      ____________________________________________________________
consensus             AATTGTAAAGATCAGAGATATCATAAGAGATGTTTCTTATAGCTGGGTTTAACTCCTTCA
 
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JMSF016J21+           GCTTTCTTTCATATAGAGCACAAATTCCATCCATTGATTGAGTGATGGAATGATAATCCA
rJMSF016J21-          GCTTTCTTTCATATAGAGCACAAATTCCATCCATTGATTGAGTGATGGAATGATAATCCA
JMSF048L24+           GCTTTCTTTCATATAGAGCACAAATTCCATCCATTGCTTGAGTGATGGAATCATAATCCA
                      ____________________________________________________________
consensus             GCTTTCTTTCATATAGAGCACAAATTCCATCCATTGATTGAGTGATGGAATGATAATCCA
 
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JMSF016J21+           TAAAAGTGCGAGTTCCTCTATGCTGAGATGTTTGCATGAGAATAATAGTGTGTTTATTTG
rJMSF016J21-          TAAAAGTGCGAGTTCCTCTATGCTGAGATGTTTGCATGAGAATAATAGTGTGTTTATTTG
JMSF048L24+           TAAAAGTGCGAGTTCCTCTATGCTGAGATGTTTGCATGAGAATAATAGTGTGTTTATTTG
                      ____________________________________________________________
consensus             TAAAAGTGCGAGTTCCTCTATGCTGAGATGTTTGCATGAGAATAATAGTGTGTTTATTTG
 
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JMSF016J21+           CCATTGGTTACGATGGAAGATCAAAGCCAAGTTTATGAAGCCTTTGGCGACGTTTTCAGG
rJMSF016J21-          CCATTGGTTACGATGGAAGATCAAAGCCAAGTTTATGAAGCCTTTGGCGACGTTTTCAGG
JMSF048L24+           CCATTGGTTACGATGGAAGATCAAAGCCAAGTTTATGAAGCCTTTGGCGACGTTTTCAGG
                      ____________________________________________________________
consensus             CCATTGGTTACGATGGAAGATCAAAGCCAAGTTTATGAAGCCTTTGGCGACGTTTTCAGG
 
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JMSF016J21+           AGAGTGTTAAGTAGAAATGGGAGGAGTTTGGAAATTTGGGCAGATGTTTATCC       
rJMSF016J21-          AGAGTGTTAAGTAGAAATGGGAGGAGTTTGGAAATTTGGGCAGATGTTTATCC       
JMSF048L24+           AGAGTGTTAAGTAGAAATGGGAGGAGTTTGGAAATTTGGGCAGATGTTTATCCAAGTCTC
                      ____________________________________________________________
consensus             AGAGTGTTAAGTAGAAATGGGAGGAGTTTGGAAATTTGGGCAGATGTTTATCCAAGTCTC