| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN018L18 | Sequence | 460 | 008073 (8) | ref|XP_004244188.1| | 1e-18 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform | |||||
| JMSF010D22 | Sequence | 333 | 008073 (8) | 733 | 008073 (8) | ref|XP_006360128.1| | 1e-87 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein-like is | |||
| JMSF040B22 | Sequence | 280 | 008073 (8) | 839 | 008073 (8) | ref|XP_006360128.1| | 4e-94 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein-like is | |||
| JMSF042K22 | Sequence | 783 | 008073 (8) | ref|XP_006360128.1| | 4e-81 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein-like is | 749 | 008073 (8) | ref|XP_009770748.1| | 5e-73 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Nicoti |
| JMSF048J04 | Sequence | 692 | 008073 (8) | ref|XP_006360128.1| | 6e-34 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein-like is | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF040B22- T
____________________________________________________________
consensus T
. : . : . : . : . : . :
rJMSF042K22- TATATCAAT
rJMSF040B22- CAGATTTTTCATATAGTTACTAAACTGGTGTATATATAATATTATAATATATATATCAAT
____________________________________________________________
consensus CAGATTTTTCATATAGTTACTAAACTGGTGTATATATAATATTATAATATATATATCAAT
. : . : . : . : . : . :
rJMSF042K22- GCACAATGGTTCTGTTCAGAATCAGTCTAATCGCTCCTACAATAATGCACCTTAAATATG
rJMSF040B22- GCACAATGGTTCTGTTCAGAATCAGTCTAATCGCTCCTACAATAATGCACCTTAAATATG
____________________________________________________________
consensus GCACAATGGTTCTGTTCAGAATCAGTCTAATCGCTCCTACAATAATGCACCTTAAATATG
. : . : . : . : . : . :
rJMSF042K22- GGTCTGAAATTCCACTCTGTTGGTCCTTATGTCATTCACCATAGTTCAATGAGTACTTAA
rJMSF040B22- GGTCTGAAATTCCACTCTGTTGGTCCTTATGTCATTCACCATAGTTCAATGAGTACTTAA
rJMSF010D22- CATAGTTCAATGAGTACTTAA
____________________________________________________________
consensus GGTCTGAAATTCCACTCTGTTGGTCCTTATGTCATTCACCATAGTTCAATGAGTACTTAA
. : . : . : . : . : . :
rJMSF042K22- CATCACCAGAAATTTGATAGACAACCAGAGCTTCTGATCTTAGATAGGAATCATGCTTTA
rJMSF040B22- CATCACCAGAAATTTGATAGACAACCAGAGCTTCTGATCTTAGATAGGAATCATGCTTTA
rJMSF010D22- CATCACCAGAAATTTGATAGACAACCAGAGCTTCTGATCTTAGATAGGAATCATGCTTTA
____________________________________________________________
consensus CATCACCAGAAATTTGATAGACAACCAGAGCTTCTGATCTTAGATAGGAATCATGCTTTA
. : . : . : . : . : . :
rJMSF042K22- GGGAAAGAACTTGGCTCACTCAAACAATGTGAAAAGCTGGTACCTTGGCATTAGCGCTCG
rJMSF040B22- GGGAAAGAACTTGGCTCACTCAAACAATGTGAAAAGCTGGTACCTTGGCATTAGCGCTCG
rJMSF010D22- GGGAAAGAACTTGGCTCACTCAAACAATGTGAAAAGCTGGTACCTTGGCATTAGCGCTCG
____________________________________________________________
consensus GGGAAAGAACTTGGCTCACTCAAACAATGTGAAAAGCTGGTACCTTGGCATTAGCGCTCG
. : . : . : . : . : . :
rJMSF042K22- GCTGCTCAGCCCTCCAGCCTCAAGACATCATGGGTAATAATCAACCTATTGCCTACATTG
rJMSF040B22- GCTGCTCAGCCCTCCAGCCTCAAGACATCATGGGTAATAATCAACCTATTGCCTACATTG
rJMSF010D22- GCTGCTCAGCCCTCCAGCCTCAAGACATCATGGGTAATAATCAACCTATTGCCTACATTG
____________________________________________________________
consensus GCTGCTCAGCCCTCCAGCCTCAAGACATCATGGGTAATAATCAACCTATTGCCTACATTG
. : . : . : . : . : . :
rJMSF042K22- CCATTGTGACAGGAAAAAGCTTATCCAAGAAGGTATATACACCACCACCTAATAGTAGTG
rJMSF040B22- CCATTGTGACAGGAAAAAGCTTATCCAAGAAGGTATATACACCACCACCTAATAGTAGTG
rJMSF010D22- CCATTGTGACAGGAAAAAGCTTATCCAAGAAGGTATATACACCACCACCTAATAGTAGTG
____________________________________________________________
consensus CCATTGTGACAGGAAAAAGCTTATCCAAGAAGGTATATACACCACCACCTAATAGTAGTG
. : . : . : . : . : . :
rJMSF042K22- CACCACTGACTGGGTTAATCCATGCTGAGAACTTGCGGAGCGATAGTAGACTCTGCAATG
rJMSF040B22- CACCACTGACTGGGTTAATCCATGCTGAGAACTTGCGGAGCGATAGTAGACTCTGCAATG
rJMSF010D22- CACCACTGACTGGGTTAATCCATGCTGAGAACTTGCGGAGCGATAGTAGACTCTGCAATG
____________________________________________________________
consensus CACCACTGACTGGGTTAATCCATGCTGAGAACTTGCGGAGCGATAGTAGACTCTGCAATG
. : . : . : . : . : . :
rJMSF042K22- CTCCGGCAAAGGAAGCAGCAAGAAGTAACGGAGCAACATAGCCGGTCGTATATGTCAGCA
rJMSF040B22- CTCCGGCAAAGGAAGCAGCAAGAAGTAACGGAGCAACATAGCCGGTCGTATATGTCAGCA
rJMSF010D22- CTCCGGCAAAGGAAGCAGCAAGAAGTAACGGAGCAACATAGCCGGTCGTATATGTCAGCA
____________________________________________________________
consensus CTCCGGCAAAGGAAGCAGCAAGAAGTAACGGAGCAACATAGCCGGTCGTATATGTCAGCA
. : . : . : . : . : . :
rJMSF042K22- GTAAACTGCCTCCTACAACTGGATCCTTAGATGCAGCAACATATCCAAGTATGGATGCTA
rJMSF040B22- GTAAACTGCCTCCTACAACTGGATCCTTAGATGCAGCAACATATCCAAGTATGGATGCTA
rJMSF010D22- GTAAACTGCCTCCTACAACTGGATCCTTAGATGCAGCAACATATCCAAGTATGGATGCTA
____________________________________________________________
consensus GTAAACTGCCTCCTACAACTGGATCCTTAGATGCAGCAACATATCCAAGTATGGATGCTA
. : . : . : . : . : . :
rJMSF042K22- GCACAGGTGTACTGCAAGGTGATGCAGCTAAGGCAAATGTAAGGCCTGCCAAATATGCTT
rJMSF040B22- GCACAGGTGTACTGCAAGGTGATGCAGCTAAGGCAAATGTAAGGCCTGCCAAATATGCTT
rJMSF010D22- GCACAGGTGTACTGCAAGGTGATGCAGCTAAGGCAAATGTAAGGCCTGCCAAATATGCTT
____________________________________________________________
consensus GCACAGGTGTACTGCAAGGTGATGCAGCTAAGGCAAATGTAAGGCCTGCCAAATATGCTT
. : . : . : . : . : . :
rJMSF042K22- GCACACTTGAAGGAAGACTGGCAGCTGCTTCACGGGGATTAAAATTGTTGAAAAATGAGG
rJMSF040B22- GCACACTTGAAGGAAGACTGGCAGCTGCTTCACGGGGATTAAAATTGTTGAAAAATGAGG
rJMSF010D22- GCACACTTGAAGGAAGACTGGCAGCTGCTTCACGGGGATTAAAATTGTTGAAAAATGAGG
JMSF042K22+ TGCTTCACGGGGATTAAAATTGTTGAAAAATGAGG
____________________________________________________________
consensus GCACACTTGAAGGAAGACTGGCAGCTGCTTCACGGGGATTAAAATTGTTGAAAAATGAGG
. : . : . : . : . : . :
rJMSF042K22- GAAGCTGCAACTCTATTACCTCTAACAAGTTAAGCCCCATAAACAATAGCTAGACTAGAA
rJMSF040B22- GAAGCTGCAACTCTATTACCTCTAACAAGTTAAGCCCCAT-AACAATAGCTAGACTAGAA
rJMSF010D22- GAAGCTGCAACTCTATTACCTCTAACAAGTTAAGCCCCAT-AACAATAGCTAGACTAGAA
JMSF042K22+ GAAGCTGCAACTCTATTACCTCTAACAAGTTAAGCCCCAT-AACAATAGCTAGACTAGAA
____________________________________________________________
consensus GAAGCTGCAACTCTATTACCTCTAACAAGTTAAGCCCCAT-AACAATAGCTAGACTAGAA
. : . : . : . : . : . :
rJMSF042K22- GCAGCCACAGGCAGTCCACG
rJMSF040B22- GCAGCCACAGGCAGTCCACGTCCGATCTGACCATATGCCTTCCCAGCAAATGCAGCAGC
rJMSF010D22- GCAGCCACAGGCAGTCCACGTCCGATCTGACCATACGCCTTCCCAGCAAATGCAGCAGCA
JMSF042K22+ GCAGCCACAGGCAGTCCACGTCCGATCTGACCATATGCCTTCCCAGCAAATGCAGCAGCA
JMSF048J04+ TCTGACCATATGCCTTCCCAGCAAATGCAGCAGCA
____________________________________________________________
consensus GCAGCCACAGGCAGTCCACGTCCGATCTGACCATATGCCTTCCCAGCAAATGCAGCAGCA
. : . : . : . : . : . :
rJMSF010D22- ATGCCNAGTAATGCAAGTGTT
JMSF042K22+ ATGCCAAGTAATGCAAGTGTTGTAGCCAATCCTAATGCAAAAGCAACTGAATTTCCAACA
JMSF048J04+ ATGCCAAGTAATGCAAGTGTTGTAGCCAATCCTAATGCAAAAGCAACTGAATTTCCAACA
____________________________________________________________
consensus ATGCCAAGTAATGCAAGTGTTGTAGCCAATCCTAATGCAAAAGCAACTGAATTTCCAACA
. : . : . : . : . : . :
JMSF042K22+ GCCGCTGCACGACTCTTGCCAGACCCAAATGCACCAATGTAACCAAGGGTAAGTGGCAAA
JMSF048J04+ GCCGCTGCACGACTCTTGCCAGACCCAAATGCACCAATGTAACCAAGGGTAAGTGGCAAA
____________________________________________________________
consensus GCCGCTGCACGACTCTTGCCAGACCCAAATGCACCAATGTAACCAAGGGTAAGTGGCAAA
. : . : . : . : . : . :
JMSF042K22+ ACACTCAATGTACATGGTGAAAGGCTAGTTACAAGCCCTGCACCAAATATAACAGCTAAA
JMFN018L18+ A
JMSF048J04+ ACACT-AATGTACATGGTGAAAGGCTAGTTACAAGCCCTGCACCAAATATAACAGCTAAA
____________________________________________________________
consensus ACACTCAATGTACATGGTGAAAGGCTAGTTACAAGCCCTGCACCAAATATAACAGCTAAA
. : . : . : . : . : . :
JMSF042K22+ CTGGAAAAACTGAGAGCTGATAGCTGGCCTTGAACAGCTTCATTAGCCTGTTGACCAGCA
JMFN018L18+ CTGGAAAAACTGAGAGCTGATAGCTGGCCTTGAACAGCTTCATTAGCCTGTTGACCAGCA
JMSF048J04+ CTGGAAAAACTGAGAGCTGATAGCTGGCCTTGAACAGCTTCATTAGCCTGTTGACCAGCA
____________________________________________________________
consensus CTGGAAAAACTGAGAGCTGATAGCTGGCCTTGAACAGCTTCATTAGCCTGTTGACCAGCA
. : . : . : . : . : . :
JMSF042K22+ GAATATACAAAGCTTCCAAACCAATCGCCAACGCCTCCATCAGCCAATGTATAAAGAGAA
JMFN018L18+ GAATATACAAAGCTTCCAAACCAATCGCCAACGCCTCCATCAGCCAATGTATAAAGAGAA
JMSF048J04+ GAATATACAAAGCTTCCAAACCAATCGCCAACGCCTCCATTAGCCAATGTATAAAGAGAA
____________________________________________________________
consensus GAATATACAAAGCTTCCAAACCAATCGCCAACGCCTCCATCAGCCAATGTATAAAGAGAA
. : . : . : . : . : . :
JMSF042K22+ GCAGGAAAATCCATGATGCTTTCCATACTTGTAGCATTTGCAGTATCAGTCACAATCAAA
JMFN018L18+ GCAGGAAAATCCATGATGCTTTCCATACTTGTAGCATTTGCAGTATCAGTCCCAATCAAA
JMSF048J04+ GCAGGAAAATCCATGATGCTTTCCATACTTGTAGCATTTGCAGTATCAGTCACAATCAAA
____________________________________________________________
consensus GCAGGAAAATCCATGATGCTTTCCATACTTGTAGCATTTGCAGTATCAGTCACAATCAAA
. : . : . : . : . : . :
JMSF042K22+ -TTTGCCGCAGCTACAGCACTAGTAACCCCCGCAAGCCAGTGCGTCTTTACAAATGACTC
JMFN018L18+ TTTTTTCTCAGCCACACCCATAGTAACCACCCCCAGCCAGTGCGTGTTTACAAATAAATC
JMSF040B22+ TAGTAACCNCCGCAAGCCAGTGCGTCTTTACAAATGACTC
JMSF048J04+ -TTTGCCGCAGCTACAGCACTAGTAACCCCCGCAAGCCAGTGCGTCTTTACAAATGACTC
____________________________________________________________
consensus -TTTGCCGCAGCTACAGCACTAGTAACCCCCGCAAGCCAGTGCGTCTTTACAAATGACTC
. : . : . : . : . : . :
JMSF042K22+ AGCATCTTC-CTGAAGAGCCTCGCATGAAATCCTCCCCTCAATCATTTTCCTTTGATTCT
JMFN018L18+ AGCATTCTCNCTCAGAACCCCGCACATAATCACTCCCCTCCCCATATTTCCTTTTATTTT
JMSF040B22+ AGCATCTTCGCTGAAGAGCCTCGCATGAAATCCTCCCCTCAATCATTTTCCTTTGATTCT
JMSF010D22+ TTTCCTTTGATTCT
JMSF048J04+ AGCATCTTC-CTGAAGAGCCTCGCATGAAATCCTCCCCTCAATCATTTTCCTTTGATTCT
____________________________________________________________
consensus AGCATCTTCGCTGAAGAGCCTCGCATGAAATCCTCCCCTCAATCATTTTCCTTTGATTCT
. : . : . : . : . : . :
JMSF042K22+ CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGCTGCGACGCAGGTGATTGCAGCTTGAGA
JMFN018L18+ CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGCTGCGACGCAGGTGATTGCAGCTTGAGA
JMSF040B22+ CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGATGCGNCGCAGGTGATTGCAGCTTGAGA
JMSF010D22+ CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGCTGCGACGCAGGTGATTGCAGCTTGAGA
JMSF048J04+ CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGCTGCGACGCAGGTGATTGCAGCTTGAGA
____________________________________________________________
consensus CACAGTAGCGCGCTTCAAACGGAGTAGTTCTGCTGCGACGCAGGTGATTGCAGCTTGAGA
. : . : . : . : . : . :
JMSF042K22+ TTGTGGTGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGCTAAGTTCATCT
JMFN018L18+ TTGTGGTGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGCTAAGTTCATCT
JMSF040B22+ TTGTGGNGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGNTAAGTTCATCT
JMSF010D22+ TTGTGGTGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGCTAAGTTCATCT
JMSF048J04+ TTGTGGTGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGCTAAGTTCATCT
____________________________________________________________
consensus TTGTGGTGTAACCAATCCCATATCTGCACCCCAAGCTGTTGAGAGCGGCTAAGTTCATCT
. : . : . : . : . : . :
JMSF042K22+ TTGCTGCCGGTGATGGTGAGGTTGCTAAC
JMFN018L18+ TTGCTGCCGGTGATGGTGAGGTTGCTAACTGAGCAACAG
JMSF040B22+ TTGNNGCCGGTGATGGTGAGGTTGCTAANTGAGCAACAGTTCAATGGAACGGAAACTC
JMSF010D22+ TTGCTGCCGGTGATGGTGAGGTTGCTAAC
JMSF048J04+ TTGCTGCCGGTGATGGTGAGGTTGCTAACTGAGCAACAGTTCAATGGAACGGAAACTCCC
____________________________________________________________
consensus TTGCTGCCGGTGATGGTGAGGTTGCTAACTGAGCAACAGTTCAATGGAACGGAAACTCCC