Contig 008071:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-                       ATACATTTTGAGAAGTGGGTAAAGTCATATATAATTCATACACAGAA
                      ____________________________________________________________
consensus                          ATACATTTTGAGAAGTGGGTAAAGTCATATATAATTCATACACAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          TTTTGTAGATCAACGTGTATAATCGAAATTATTGGTAGCTAATTATTAATTAATACTTGT
                      ____________________________________________________________
consensus             TTTTGTAGATCAACGTGTATAATCGAAATTATTGGTAGCTAATTATTAATTAATACTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          AGCCGGAAACAAAGAGGCTCTCAGAAGCAGCGCCGCCGGAGCTACCGCCGGCGTATTGGC
                      ____________________________________________________________
consensus             AGCCGGAAACAAAGAGGCTCTCAGAAGCAGCGCCGCCGGAGCTACCGCCGGCGTATTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          CGAGGGTGGCGTCGGAGTTAGCCTTGCACCTCACCAAGAATGCGGCTTGTGCCTTGTCAA
JMSF048G01+                                         TCACCAAGAATGCGGCTTGTGCCTTGTCAA
                      ____________________________________________________________
consensus             CGAGGGTGGCGTCGGAGTTAGCCTTGCACCTCACCAAGAATGCGGCTTGTGCCTTGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          CATTGTCCTTCTTCCCTGCCCATGTTTTCAGGGTGCTTTGCTGCAGAGCTCGCCCAAAAG
JMSF048G01+           CATTGTCCTTCTTCCCTGCCCATGTTTTCAGGGTGCTTTGCTGCAGAGCTCGCCCAAAAG
                      ____________________________________________________________
consensus             CATTGTCCTTCTTCCCTGCCCATGTTTTCAGGGTGCTTTGCTGCAGAGCTCGCCCAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          AGAATGAAAGAGTCCATGGCTTCAACACTTGAAGTTTGTTCATCGCGTTTAGGGTCACCG
JMSF048G01+           AGAATGAAAGAGTCCATGGCTTCAACACTTGAAGTTTGTTCATCGCGTTTAGGGTCACCG
                      ____________________________________________________________
consensus             AGAATGAAAGAGTCCATGGCTTCAACACTTGAAGTTTGTTCATCGCGTTTAGGGTCACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          TCGCTTCTTCCTCGCTCTGTCCTCCCGACAAGAACACGATCCCCGGCACCGCCGGTGGAA
JMSF048G01+           TCGCTTCTTCCTCGCTCTGTCCTCCCGACAAGAACACGATCCCCGGCACCGCCGGTGGAA
                      ____________________________________________________________
consensus             TCGCTTCTTCCTCGCTCTGTCCTCCCGACAAGAACACGATCCCCGGCACCGCCGGTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          CGGTCCGCCGCAGTGCCGTCACTGTGTATTCAGCAATCACTTCTGCCGCAACCTTTGGGC
JMSF048G01+           CGGTCCGCCGCAGTGCCGTCACTGTGTATTCAGCAATCACTTCTGCCGCAACCTTTGGGC
                      ____________________________________________________________
consensus             CGGTCCGCCGCAGTGCCGTCACTGTGTATTCAGCAATCACTTCTGCCGCAACCTTTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          TGGTGGAGCCAGGGGTGACCATGTTAGGCTTCAAGAGGGTACCTTCAAGAAGGACATGGT
JMSF048G01+           TGGTGGAGCCAGGGGTGACCATGTTAGGCTTCAAGAGGGTACCTTCAAGAAGGACATGGT
                      ____________________________________________________________
consensus             TGGTGGAGCCAGGGGTGACCATGTTAGGCTTCAAGAGGGTACCTTCAAGAAGGACATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          GGTCATTGAGAGCTTTGTAAACGGCGGCTAGAACAGTCTCGGTAACCGCCGCACATTTCT
JMSF048G01+           GGTCATTGAGAGCTTTGTAAACGGCGGCTAGAACAGTCTCGGTAACCGCCGCACATTTCT
                      ____________________________________________________________
consensus             GGTCATTGAGAGCTTTGTAAACGGCGGCTAGAACAGTCTCGGTAACCGCCGCACATTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          TGATGTCATGGTCGCCGTCGGTGAGGACTTCCGGCTCCACGATCGGAACCAGCCCATTCT
JMSF048G01+           TGATGTCATGGTCGCCGTCGGTGAGGACTTCCGGCTCCACGATCGGAACCAGCCCATTCT
                      ____________________________________________________________
consensus             TGATGTCATGGTCGCCGTCGGTGAGGACTTCCGGCTCCACGATCGGAACCAGCCCATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          CCTGGCAGATAACGGCGTAGCGAGCCAACCCCTGAGCGTTCTGCTGGATGGAAAGTTCCG
JMSF048G01+           CCTGGCAGATAACGGCGTAGCGAGCCAACCCCTGAGCGTTCTGCTGGATGGAAAGTTCCG
                      ____________________________________________________________
consensus             CCTGGCAGATAACGGCGTAGCGAGCCAACCCCTGAGCGTTCTGCTGGATGGAAAGTTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          ACGGCTCGGTGGGCCCGATTTTCAGCACCGCCCTCCACTTGGCGAA-CGCGCGCCGGCCG
JMSF048G01+           ACGGCTCGGTGGGCCCGATTTTCAGCACCGCCCTCCACTTGGCGAACCGCGCGCCGGCCG
                      ____________________________________________________________
consensus             ACGGCTCGGTGGGCCCGATTTTCAGCACCGCCCTCCACTTGGCGAACCGCGCGCCGGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G01-          TGTAGTACTCCTTGCACCGCGCGCCCA                                 
JMSF048G01+           TGTAGTACTCCTTGCACCGCGCGCCCAGGGAGTCGAAACCCTGAGTGCTGGTTTCCCCGT
                      ____________________________________________________________
consensus             TGTAGTACTCCTTGCACCGCGCGCCCAGGGAGTCGAAACCCTGAGTGCTGGTTTCCCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048G01+           TCGTCCCGGCGAGCTCCACGGTCCCCTTGTCCACCTTGATGCCCGGAACGACATCGTTTT
                      ____________________________________________________________
consensus             TCGTCCCGGCGAGCTCCACGGTCCCCTTGTCCACCTTGATGCCCGGAACGACATCGTTTT