Contig 008032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048C02Sequence242008032 (6)
JMFS068F08Sequence615008032 (6)ref|XP_009613357.1|4e-27PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis
JMFS146A12Sequence626008032 (6)ref|XP_009613357.1|1e-21PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis
JMSF012P01Sequence412008032 (6)762007065 (3)ref|XP_009613357.1|1e-42PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis
JMSF021P19Sequence650008032 (6)ref|XP_009613357.1|2e-22PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis740007065 (3)ref|XP_009779024.1|1e-80PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]
JMSF043E16Sequence764008032 (6)ref|XP_009613357.1|2e-25PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis744007065 (3)ref|XP_009779024.1|1e-36PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS068F08+ TGCTTCTTANAATTATTAAGTTCTTCAATAAGTCTCTTAGGATTTGAACACCCAT
JMSF021P19+ CTCTTAGGATTTGAACACCCAT
JMFS146A12+ CTCTTAGGATTTGAACACCCAT
JMSF043E16+ ATTATTAAGTTCTTCAATAAGTCTCTTAGGATTTGAACACCCAT
                      ____________________________________________________________
consensus TGCTTCTTANAATTATTAAGTTCTTCAATAAGTCTCTTAGGATTTGAACACCCAT
 
. : . : . : . : . : . :
JMFS068F08+ CTTGAGAGTTCTCCGCAATGACTATGTTATGAAGAACCTTCGGATCGCCTTCTTTGTTCT
JMSF021P19+ CTTGAGAGTTCTCCGCAATGACTATGTTATGAAGAACCTTCGGATCGCCTTCTTTGTTCT
JMFS146A12+ CTTGAGAGTTCTCCGCAATGACTATGTTATGAAGAACCTTCGGATCGCCTTCTTTGTTCT
JMSF043E16+ CTTGAGAGTTCTCCGCAATGACTATGTTATGAAGAACCTTCGGATCGCCTTCTTTGTTCT
                      ____________________________________________________________
consensus CTTGAGAGTTCTCCGCAATGACTATGTTATGAAGAACCTTCGGATCGCCTTCTTTGTTCT
 
. : . : . : . : . : . :
JMFS048C02+ TCCCCGACTGGAAAAGCAAAT
JMFS068F08+ GAAAGAGCTGATTCAAAACTCTAATGCAATCCTTAAATTTCCCCGACTGGAAAAGCAAAG
JMSF021P19+ GAAAGAGCTGATTCAAAACTCTAATGCAATCCTTAAATTTCCCCGACTGGAAAAGCAAAG
JMFS146A12+ GAAAGAGCTGATTCAAAACTCTAATGCAATCCTTAAATTTCCCCGACTGGAAAAGCAAAG
JMSF043E16+ GAAAGAGCTGATTCAAAACTCTAATGCAATCCTTAAATTTCCCCGACTGGAAAAGCAAAG
                      ____________________________________________________________
consensus GAAAGAGCTGATTCAAAACTCTAATGCAATCCTTAAATTTCCCCGACTGGAAAAGCAAAG
 
. : . : . : . : . : . :
JMSF012P01+ CTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
JMFS048C02+ CGGCTTCCTTGGCAAGTCTGTAGGCAACATAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
JMFS068F08+ CGGCCTCCTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
JMSF021P19+ CGGCCTCCTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
JMFS146A12+ CGGCCTCCTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
JMSF043E16+ CGGCCTCCTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
                      ____________________________________________________________
consensus CGGCCTCCTTGGCAAGTCCGGAGGCAACAGAGGGTGCAACCTCGTCTTCCGCAGTTGCCG
 
. : . : . : . : . : . :
JMSF012P01+ CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
JMFS048C02+ CCACAGTTGGTGACGAGGAAGGGGCTTCTCGATTATTTGACATCGCCATTGAGGAAGAGG
JMFS068F08+ CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
JMSF021P19+ CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
JMFS146A12+ CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
JMSF043E16+ CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
                      ____________________________________________________________
consensus CCACAGCTGGTGACGAGGAAGGGGCTTCTCGATTATTCGACATCGCCATTGAGGAAGAGG
 
. : . : . : . : . : . :
JMSF012P01+ AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
JMFS048C02+ AACCCGATGAATCCATCCAGCAACAGATGGATACAGCCTCCGGTAGGAAATGAACCGCAA
JMFS068F08+ AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
JMSF021P19+ AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
JMFS146A12+ AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
JMSF043E16+ AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
                      ____________________________________________________________
consensus AACCCGATGAATCCATCCAGCAACAGATCGATACAGCCTCCGGTAGGAAATGAACCGCAA
 
. : . : . : . : . : . :
JMSF012P01+ CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
JMFS048C02+ CAATCCAAAAACCGTAAGCTTCGCAATGTAAACCCTCACT
JMFS068F08+ CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
JMSF021P19+ CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
JMFS146A12+ CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
JMSF043E16+ CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
                      ____________________________________________________________
consensus CAATCCAAAAACCCTAAGCTTCGCAATGTAAACCCTCACTCTAAAGGCTCAGTTGACGTT
 
. : . : . : . : . : . :
JMSF012P01+ ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
JMFS068F08+ ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
JMSF021P19+ ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
JMFS146A12+ ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
JMSF043E16+ ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
                      ____________________________________________________________
consensus ATCCGCATCCAAATCTCAATTCGTACAGATCGAGTGAGATTGATACTCAAAACCCTAGTG
 
. : . : . : . : . : . :
JMSF012P01+ CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
JMFS068F08+ CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
JMSF021P19+ CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
JMFS146A12+ CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
JMSF043E16+ CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
                      ____________________________________________________________
consensus CTTCAACACAACATATACATTCAAACATCTGAAGGCTGAATATGCATATGATACTACATG
 
. : . : . : . : . : . :
JMSF012P01+ TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAG
JMFS068F08+ TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGA
JMSF021P19+ TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGA
JMFS146A12+ TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGA
JMSF043E16+ TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGA
                      ____________________________________________________________
consensus TATGTATCGATTTGGGATGCGCCGATTTGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGA
 
. : . : . : . : . : . :
JMFS068F08+ ACGAGAGAGAGAGAGAGTGG
JMSF021P19+ ACGAGAGAGAGAGAGAGTGGGGGGAAAGCGGATAGAGAGAAAATCTAGAGCGAATCAGAG
JMFS146A12+ ACGAGAGAGAGAGAGAGTGGGGGGAAAGCGGATAGAGAGAAAATCTAGAGCGAATCAGAG
JMSF043E16+ ACGAGAGAGAGAGAGAGTGGGGGGAAAGCGGATAGAGAGAAAATCTAGAGCGAATCAGAG
                      ____________________________________________________________
consensus ACGAGAGAGAGAGAGAGTGGGGGGAAAGCGGATAGAGAGAAAATCTAGAGCGAATCAGAG
 
. : . : . : . : . : . :
JMSF021P19+ TAAAGGGCTAAATGGTTAATTC
JMFS146A12+ TAAA
JMSF043E16+ TAAAGGGCTAAATGGTTAATTCACTGTAAGTTTGGGGGCTCGGTGAGAACACAAATTAGA
                      ____________________________________________________________
consensus TAAAGGGCTAAATGGTTAATTCACTGTAAGTTTGGGGGCTCGGTGAGAACACAAATTAGA
 
. : . : . : . : . : . :
JMSF043E16+ GAAGAAGACGAGTTTAAAAAGAAATTGATGGGGAATAGGTTTGGGGACCAAAGTCAATTC
                      ____________________________________________________________
consensus GAAGAAGACGAGTTTAAAAAGAAATTGATGGGGAATAGGTTTGGGGACCAAAGTCAATTC