Contig 008023:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018M21Sequence474008023 (8)ref|XP_002265275.1|2e-37PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera]787008023 (8)ref|XP_009795959.1|9e-126PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana
JMSF018N21Sequence496008023 (8)ref|XP_002265275.1|2e-43PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera]761008023 (8)ref|XP_009795959.1|3e-127PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana
JMSF019N21Sequence746008023 (8)ref|XP_009795959.1|3e-125PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana
JMSF027G04Sequence627008023 (8)gb|AHM22923.1|1e-65indole-3-glycerol phosphate synthase [Nicotiana tabacum]693008023 (8)ref|XP_009795959.1|7e-100PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic-like [Nicotiana
JMSF042C09Sequence754008023 (8)ref|XP_002265275.1|1e-97PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera]688024652ref|NP_001234785.1|6e-90hexose transporter protein [Solanum lycopersicum] emb|CAA09419.1| hexose transpo

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027G04- TCAGCTGAAATAGCAAAAGCATTTTGTTTATACAA
                      ____________________________________________________________
consensus TCAGCTGAAATAGCAAAAGCATTTTGTTTATACAA
 
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rJMSF027G04- CTAATAATTATTTGGGTATTTCACTGAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF019N21- GAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF018N21- GAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
rJMSF018M21- TAACCAAATTTGGGAACTTTAAG
                      ____________________________________________________________
consensus CTAATAATTATTTGGGTATTTCACTGAGAGAGATAAGTAACCAAATTTGGGAACTTTAAG
 
. : . : . : . : . : . :
rJMSF027G04- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF019N21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF018N21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
rJMSF018M21- GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
                      ____________________________________________________________
consensus GATTTAAGGTACTAGATACAACACAAAACTGTATAAGAACCTGTTCAAGGTTCAATTAAA
 
. : . : . : . : . : . :
rJMSF027G04- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF019N21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF018N21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
rJMSF018M21- CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
                      ____________________________________________________________
consensus CCCAAAGGCCCAAAGAGATACATAAGCCTTAGTCTTCTGGGATCTCAGCAGGAAATATCT
 
. : . : . : . : . : . :
rJMSF027G04- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF019N21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF018N21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
rJMSF018M21- TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
                      ____________________________________________________________
consensus TTACCAAATAGTTCAGAAATTCCTTTTGTAGGGTCTTGCTGTTTCACAATCGACTCTCCC
 
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rJMSF027G04- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF019N21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF018N21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
rJMSF018M21- ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
                      ____________________________________________________________
consensus ACTAAAACTGCTCTGACACCAGCTTCTTGTACATATGCAATATCAGCAGGAGTAAATAGT
 
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rJMSF027G04- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF019N21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF018N21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
rJMSF018M21- CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
                      ____________________________________________________________
consensus CCAGATTCCCCAACAACAATTATGCCCTTCTCACGGATCTTTTCCCCACGTTCTCCTTGA
 
. : . : . : . : . : . :
rJMSF027G04- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF019N21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF018N21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
rJMSF018M21- AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
                      ____________________________________________________________
consensus AGGAGTTTCTTTGTGTTGCTAATATCAACTTTGAAAGTTCCTAGGTCTCTGTTATTGATG
 
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rJMSF027G04- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF019N21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF018N21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
rJMSF018M21- CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
                      ____________________________________________________________
consensus CCAACCAGTTCAACCACATCTATTCCAAGCACACGATCCATCTCCCTCTCATCATGTACC
 
. : . : . : . : . : . :
rJMSF027G04- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF019N21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF018N21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
rJMSF018M21- TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
                      ____________________________________________________________
consensus TCAACAAGTGCAGTCATCCCAAGCAATTTGCAGATCTTAATCATATATTTTATATCAAGA
 
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rJMSF027G04- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAN
rJMSF019N21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
rJMSF018N21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
rJMSF018M21- TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
                      ____________________________________________________________
consensus TCAGGTAAAACAGCGGCAATCAAAAGAACTGCATCAGCCCCTTTGGTTCGAGCATAGTAA
 
. : . : . : . : . : . :
rJMSF027G04- ATTTGCCATGCGTCTATNATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCAT
rJMSF019N21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
rJMSF018N21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
rJMSF018M21- ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
                      ____________________________________________________________
consensus ATTTGCCATGCGTCTATAATAAATTCTTTGCACAACAAAGGACACGTCACTCCAGCATTC
 
. : . : . : . : . : . :
rJMSF019N21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
rJMSF018N21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
rJMSF018M21- CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
JMSF042C09+ TCCCTTAAAATACTTCTCATCAGTCAAAACACTA
                      ____________________________________________________________
consensus CTTATAGCCTCAAGGTTTTCAAAGCTTCCCTTAAAATACTTCTCATCAGTCAAAACACTA
 
. : . : . : . : . : . :
rJMSF019N21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGG
rJMSF018N21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCA
rJMSF018M21- AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGC-ATTTCAACAGGATCAAAATCTTCT
JMSF042C09+ AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCAACAGGATCAAAATCTTCT
                      ____________________________________________________________
consensus AGGCATGCTGCTCCACCTTTCTCATAAGCTTTGGCAATTTCAACAGGATCAAAATCTTCT
 
. : . : . : . : . : . :
rJMSF018M21- CTTAATATCCCTCTGCTTG
JMSF027G04+ TCACTTCAGCAATCAAGCCAGGCAATCCA
JMSF042C09+ CTTAATATCCCTCTGCTTGGAGAAGCCTTCTTCACTTCAGCAATCAAGCCAGGCAATCCA
                      ____________________________________________________________
consensus CTTAATATCCCTCTGCTTGGAGAAGCCTTCTTCACTTCAGCAATCAAGCCAGGCAATCCA
 
. : . : . : . : . : . :
JMSF027G04+ GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
JMSF042C09+ GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
                      ____________________________________________________________
consensus GTTCTAGAATAAGATGCCTTAAGAGCACCAACAAAATCTCGAGCAGGAGGTGCTTCCTCA
 
. : . : . : . : . : . :
JMSF018N21+ ATCTCAGAAACTTCCTTGTCC
JMSF027G04+ AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
JMSF042C09+ AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
                      ____________________________________________________________
consensus AGTGCTTTCCTCAACGTGCCAAGATGTCTTCTCTCCTTCATCTCAGAAACTTCCTTGTCC
 
. : . : . : . : . : . :
JMSF018N21+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
JMSF018M21+ TGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCNTTCGTTCTGCAACCGA
JMSF027G04+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
JMSF042C09+ TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
                      ____________________________________________________________
consensus TTGTTCCAAACAATCTCTTCTAGAATGTTCCGAGGTGTGTTCCCTTCGTTCTGCAACCGA
 
. : . : . : . : . : . :
JMSF018N21+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF018M21+ AACTNGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF027G04+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
JMSF042C09+ AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
                      ____________________________________________________________
consensus AACTCGAAAGGGCCAACGTAATGCAACGGCGGCCCTGTAAGCGGCCTTCTCCGAATCCTT
 
. : . : . : . : . : . :
JMSF018N21+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF018M21+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF027G04+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
JMSF042C09+ ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
                      ____________________________________________________________
consensus ATACCCTGGTTAGCAGCAACCTCATCCTGGAGCCTCTGCACTTCCCATTCCTTGATTTTC
 
. : . : . : . : . : . :
JMSF018N21+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF018M21+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF027G04+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
JMSF042C09+ AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
                      ____________________________________________________________
consensus AGGGCCTCTGCTTCCGATATATTCGATTCAGAAAGCGTTGCGGACTCTTCCTTCAAGTCA
 
. : . : . : . : . : . :
JMSF018N21+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF018M21+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF027G04+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
JMSF042C09+ GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
                      ____________________________________________________________
consensus GGCTGTTGAGCTCGAATTGGAGAACAAGAGAGGGAAATGCGTTTCGGGTTTGACATGAGA
 
. : . : . : . : . : . :
JMSF018N21+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF018M21+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF027G04+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
JMSF042C09+ GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
                      ____________________________________________________________
consensus GCCCCGGCACTGGAGAAGCCGAACCTTTTGGGTGTGAGATTGATTGGGGTTCGAAATGAG
 
. : . : . : . : . : . :
JMSF018N21+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF018M21+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF027G04+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
JMSF042C09+ ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
                      ____________________________________________________________
consensus ACCGCCGGTCTTACCGTCGCCGCCGGTGCGGTGGTTCTGAATTGCAACGAAGCCTCCATC
 
. : . : . : . : . : . :
JMSF018N21+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF018M21+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF027G04+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTC
JMSF042C09+ AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTCTCGTCC
                      ____________________________________________________________
consensus AGTGAAACTGGACAATGGAGCTGGGGAATTTGGATTTTTTTTAAATTATTTTTCTCGTCC