Contig 008015:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN016M12+                                                           CTAAATGAATAT
                      ____________________________________________________________
consensus                                                             CTAAATGAATAT
 
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JMFN016M12+           TATTGTGCAATACCAAAATTGAATCAATACAATTGTCTTAACGACGAATTACAGTTCGAG
rJMSF041G07-                                            GTCTTAACGACGAATTACAGTTCGAG
                      ____________________________________________________________
consensus             TATTGTGCAATACCAAAATTGAATCAATACAATTGTCTTAACGACGAATTACAGTTCGAG
 
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JMFN016M12+           TTTGATACATTCATGTGTG-TCTTTTAAACTACAGTTCTTAGAGTGAGTTATACTGTGAC
rJMSF041G07-          TTTGATACATTCATGTGTGTTCTTTTAAACTACAGTTCTTAGAGTGAGTTATACTGTGAC
                      ____________________________________________________________
consensus             TTTGATACATTCATGTGTGTTCTTTTAAACTACAGTTCTTAGAGTGAGTTATACTGTGAC
 
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JMFN016M12+           GGTGAACAAGTAGAGCTTTAGCACCAAAGCAAGAGCAAGCTGCAACAGAAAGATACCAAC
rJMSF041G07-          GGTGAACAAGTAGAGCTTTAGCACCAAAGCAAGAGCAAGCTGCAACAGAAAGATACCAAC
                      ____________________________________________________________
consensus             GGTGAACAAGTAGAGCTTTAGCACCAAAGCAAGAGCAAGCTGCAACAGAAAGATACCAAC
 
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JMFN016M12+           TACAATCAAGAACCACCTCTCACCGGAAGAGGTGATGTGGGTCTTGAGATTAAGTGCGAC
rJMSF041G07-          TACAATCAAGAACCACCTCTCACCGGAAGAGGTGATGTGGGTCTTGAGATTAAGTGCGAC
                      ____________________________________________________________
consensus             TACAATCAAGAACCACCTCTCACCGGAAGAGGTGATGTGGGTCTTGAGATTAAGTGCGAC
 
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JMFN016M12+           GAAGGTGGCGGACATGAACCCTGCTACACCAGCAATCACCCATCTGAAAATTTCGAAAGG
rJMSF041G07-          GAAGGTGGCGGACATGAACCCTGCTACACCAGCAATCACCCATCTGAAAATTTCGAAAGG
                      ____________________________________________________________
consensus             GAAGGTGGCGGACATGAACCCTGCTACACCAGCAATCACCCATCTGAAAATTTCGAAAGG
 
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JMFN016M12+           GACAACAGAGAGGCACAATGCAGGGATGAAGATGAACAGGGAATATCCATAAAGACAGAA
rJMSF041G07-          GACAACAGAGAGGCACAATGCAGGGATGAAGATGAACAGGGAATATCCATAAAGACAGAA
JMSF041G07+                                                      TATCCATAAAGACAGAA
                      ____________________________________________________________
consensus             GACAACAGAGAGGCACAATGCAGGGATGAAGATGAACAGGGAATATCCATAAAGACAGAA
 
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JMFN016M12+           CAGTTGAACAATGCCAGCTGGAGCAGAGAAGTACTTGAGAATTACATATAAGCAGAGAGG
rJMSF041G07-          CAGTTGAACAATGCCAGCTGGAGCAGAGAAGTACTTGAGAATTACATATAAGCAGAGAGG
JMSF041G07+           CAGTTGAACAATGCCAGCTGGAGCAGAGAAGTACTTGAGAATTACATATAAGCAGAGAGG
                      ____________________________________________________________
consensus             CAGTTGAACAATGCCAGCTGGAGCAGAGAAGTACTTGAGAATTACATATAAGCAGAGAGG
 
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JMFN016M12+           GACTATCAGTACATATCCATAGAATAAGCCTGCAGACCAAGTCATCAGATTGATGTCATA
rJMSF041G07-          GACTATCAGTACATATCCATAGAATAAGCCTGCAGACCAAGTCATCAGATTGATGTCATA
JMSF041G07+           GACTATCAGTACATATCCATAGAATAAGCCTGCAGACCAAGTCATCAGATTGATGTCATA
                      ____________________________________________________________
consensus             GACTATCAGTACATATCCATAGAATAAGCCTGCAGACCAAGTCATCAGATTGATGTCATA
 
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JMFN016M12+           CTCCCATTCTTTGTCCTGAAGCTTGTGGGATAGATATGTAACAAA               
rJMSF041G07-          CTCCCATTCTTTGTCCTGAAGCTTGTGGGATAGATATGTAACAAACGTGCCAATGGAAGC
JMSF050A14+                            GAAGCTTGTGGGATAGATATGTAACAAACGTGCCAATGGAAGC
JMSF041G07+           CTCCCATTCTTTGTCCTGAAGCTTGTGGGATAGATATGTAACAAACGTGCCAATGGAAGC
                      ____________________________________________________________
consensus             CTCCCATTCTTTGTCCTGAAGCTTGTGGGATAGATATGTAACAAACGTGCCAATGGAAGC
 
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rJMSF041G07-          TGCCACAAATATCAAGGTAGTGCATATCCAGAATGGTCCATACAAATCTGGGCTACTAGA
JMSF050A14+           TGCCACAAATATCAAGGTAGTGCATATCCAGAATGGTCCATACAAATCTGGGCTACTAGA
JMSF041G07+           TGCCACAAATATCAAGGTAGTGCATATCCAGAATGGTCCATACAAATCTGGGCTACTAGA
                      ____________________________________________________________
consensus             TGCCACAAATATCAAGGTAGTGCATATCCAGAATGGTCCATACAAATCTGGGCTACTAGA
 
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rJMSF041G07-          AGTCTTCTCAGTAAAGGCTCCGCTGAAAGGAAAGAGTGAATCTTTTATTCTGTCTAAAAC
JMSF050A14+           AGTCTTCTCAGTAAAGGCTCCGCTGAAAGGAAAGAGTGAATCTTTTATTCTGTCTAAAAC
JMSF041G07+           AGTCTTCTCAGTAAAGGCTCCGCTGAAAGGAAAGAGTGAATCTTTTATTCTGTCTAAAAC
                      ____________________________________________________________
consensus             AGTCTTCTCAGTAAAGGCTCCGCTGAAAGGAAAGAGTGAATCTTTTATTCTGTCTAAAAC
 
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rJMSF041G07-          ATCAGATGTGTCGACGTCAAAATAGGGCTTGTAAGCAGCAATGGTGAAAACACCCAACCA
JMSF050A14+           ATCAGATGTGTCGACGTCAAAATAGGGCTTGTAAGCAGCAATGGTGAAAACACCCAACCA
JMSF041G07+           ATCAGATGTGTCGACGTCAAAATAGGGCTTGTAAGCAGCAATGGTGAAAACACCCAACCA
                      ____________________________________________________________
consensus             ATCAGATGTGTCGACGTCAAAATAGGGCTTGTAAGCAGCAATGGTGAAAACACCCAACCA
 
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rJMSF041G07-          GCCACTCGGCTGCTGCTGCTCCTGCTGGGGGCACTTCAGAACCAGATGCTGGTTNGGAGA
JMSF050A14+           GCCACTCGGCTGCTGCTGCTCCTGCT-GGGGCACTTCAGAACCAGATGCTGGTTTGGAGA
JMSF041G07+           GCCACTCGGCTGCTGCTGCTCCTGCT-GGGGCACTTCAGAACCAGATGCTGGTTTGGAGA
                      ____________________________________________________________
consensus             GCCACTCGGCTGCTGCTGCTCCTGCT-GGGGCACTTCAGAACCAGATGCTGGTTTGGAGA
 
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rJMSF041G07-          AGGTATCATCAGCATCA                                           
JMSF050A14+           AGGTATCATCAGCATCACGAGGTGGCCCAGAGCTACGTGAGATTTTCCCCTGTGAAGTCG
JMSF041G07+           AGGTATCATCAGCATCACGAGGTGGCCCAGAGCTACGTGAGATTTTCCCCTGTGAAGTCG
                      ____________________________________________________________
consensus             AGGTATCATCAGCATCACGAGGTGGCCCAGAGCTACGTGAGATTTTCCCCTGTGAAGTCG
 
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JMSF050A14+           AAGGCGGAAAGGTCTGAAGATTCGACTCAGTGAATTTGACAGAAACTTGGGATGGAGGAT
JMSF041G07+           AAGGCGGAAAGGTCTGAAGATTCGACTCAGTGAATTTGACAGAAACTTGGGATGGAGGAT
                      ____________________________________________________________
consensus             AAGGCGGAAAGGTCTGAAGATTCGACTCAGTGAATTTGACAGAAACTTGGGATGGAGGAT
 
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JMSF050A14+           CTGCTACTGCAGGAACAGATCCGGAGACATTTTGATTATCAATGGCAGTGTAATTGCTTG
JMSF041G07+           CTGCTACTGCAGGAACAGATCCGGAGACATTTTGATTATCAATGGCAGTGTAATTGCTTG
                      ____________________________________________________________
consensus             CTGCTACTGCAGGAACAGATCCGGAGACATTTTGATTATCAATGGCAGTGTAATTGCTTG
 
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JMSF050A14+           ACATCATCTTTGCGATTCAGTATTATCTGTGCTTGTATGTATATTTATCTATATATACAT
JMSF041G07+           ACATCATCTTTGCGATTCAGTATTATCTGTGCTTGTATGTATATTTATCTATATATACAT
                      ____________________________________________________________
consensus             ACATCATCTTTGCGATTCAGTATTATCTGTGCTTGTATGTATATTTATCTATATATACAT
 
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JMSF050A14+           ATAACAATATGTAATTTTTGAAGAAGAAGCTCTTATTCGAGGCCCGGCCTGCAGAGCTTC
JMSF041G07+           ATAACAATATGTAATTTTTGAAGAAGAAGCTCTTATTCGAGGCCCGGCCTGCAGAGCTTC
                      ____________________________________________________________
consensus             ATAACAATATGTAATTTTTGAAGAAGAAGCTCTTATTCGAGGCCCGGCCTGCAGAGCTTC
 
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JMSF050A14+           GCTTTCTTCTTC                                                
JMSF041G07+           GCTTTCTTCTTCAGGGATCTTGCGAAGGAGATCTACCATTCTCCGTTTAAAGATTAAACC
                      ____________________________________________________________
consensus             GCTTTCTTCTTCAGGGATCTTGCGAAGGAGATCTACCATTCTCCGTTTAAAGATTAAACC