Contig 008003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS134E02Sequence616008003 (3)emb|CDP18860.1|3e-14unnamed protein product [Coffea canephora]
JMSF019A16Sequence357008003 (3)791013949 (3)emb|CDP18860.1|2e-87unnamed protein product [Coffea canephora]
JMSF039N19Sequence658008003 (3)emb|CDP18860.1|7e-11unnamed protein product [Coffea canephora]736013949 (3)emb|CAC85727.1|290putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum]

Alignment

This contig is upended


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JMFS134E02+                                                         ATCACTATAGGCCC
                      ____________________________________________________________
consensus                                                           ATCACTATAGGCCC
 
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JMFS134E02+           TGCTCCTAATATCAAAATCTTCTTTATATCTGTTCTCTTCCCCAGTTTCTGCTCACTCAC
JMSF039N19+             CTCCTAATATCAAAATCTTCTTTATATCTGTTCTCTTCCCCAGTTTCTGCTCACTCAC
                      ____________________________________________________________
consensus             TGCTCCTAATATCAAAATCTTCTTTATATCTGTTCTCTTCCCCAGTTTCTGCTCACTCAC
 
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JMFS134E02+           AACACCATTTTCACATCGAATCGAGCTCACACTGATCCTAAATTTACTCTCATGCAAAAC
JMSF039N19+           AACACCATTTTCACATCGAATCGAGCTCACACTGATCCTAAATTTACTCTCATGCAAAAC
                      ____________________________________________________________
consensus             AACACCATTTTCACATCGAATCGAGCTCACACTGATCCTAAATTTACTCTCATGCAAAAC
 
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JMFS134E02+           TGGGGACCCATATTGAAGGTTCAAACATGAATAATCTTTCTTCACACTTGGTTTTGTGAA
JMSF039N19+           TGGGGACCCATATTGAAGGTTCAAACATGAATAATCTTTCTTCACACTTGGTTTTGTGAA
                      ____________________________________________________________
consensus             TGGGGACCCATATTGAAGGTTCAAACATGAATAATCTTTCTTCACACTTGGTTTTGTGAA
 
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JMFS134E02+           GTGGGTAGATACCCGAAAAGCATTAGCTTTATTTAAATGGGACTTCAAAGCGTATGATGA
JMSF039N19+           GTGGGTAGATACCCGAAAAGCATTAGCTTTATTTAAATGGGACTTCAAAGCGTATGATGA
                      ____________________________________________________________
consensus             GTGGGTAGATACCCGAAAAGCATTAGCTTTATTTAAATGGGACTTCAAAGCGTATGATGA
 
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JMFS134E02+           TGAAGAGGAAATGAGCTTAGATGAAACATTCTCACAGCGATTCATACAATAACCCATCTT
JMSF019A16+                                                CGATTCATACAATAACCCATCTT
JMSF039N19+           TGAAGAGGAAATGAGCTTAGATGAAACATTCTCACAGCGATTCATACAATAACCCATCTT
                      ____________________________________________________________
consensus             TGAAGAGGAAATGAGCTTAGATGAAACATTCTCACAGCGATTCATACAATAACCCATCTT
 
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JMFS134E02+           AACAATCTCACTCTCGTCCTCTTCGTTCTCTTAACTTCACCAAAGAACAATCTAAAAGAC
JMSF019A16+           AACAATCTCACTCTCCTCCTCTTCGTTCTCTTAACTTCACCAAAGAACAATCTAAAAGAC
JMSF039N19+           AACAATCTCACTCTCCTCCTCTTCGTTCTCTTAACTTCACCAAAGAACAATCTAAAAGAC
                      ____________________________________________________________
consensus             AACAATCTCACTCTCCTCCTCTTCGTTCTCTTAACTTCACCAAAGAACAATCTAAAAGAC
 
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JMFS134E02+           TAAATGTCAAGAAAAACACAGTGATACAGTAGATAGAGAGAAAGATAAGATAGAACCTTG
JMSF019A16+           TAAATGTCAAGAAAAACACAGTGATACAGTAGATAGAGAGAAAGATAAGATAGAACCTTG
JMSF039N19+           TAAATGTCAAGAAAAACACAGTGATACAGTAGATAGAGAGAAAGATAAGATAGAACCTTG
                      ____________________________________________________________
consensus             TAAATGTCAAGAAAAACACAGTGATACAGTAGATAGAGAGAAAGATAAGATAGAACCTTG
 
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JMFS134E02+           AAGGTGGCGCCTTGGGGGGGTTAAAAACCGAACCTTTTGCGGGTATGGACGTTTGTATGT
JMSF019A16+           AAGGTGGCGCCTTGGGGGGGTTAAAAACCGAACCTTTTGCGGGTATGGACGTTTGTATGT
JMSF039N19+           AAGGTGGCGCCTTGGGGGGGTTAAAAACCGAACCTTTTGCGGGTATGGACGTTTGTATGT
                      ____________________________________________________________
consensus             AAGGTGGCGCCTTGGGGGGGTTAAAAACCGAACCTTTTGCGGGTATGGACGTTTGTATGT
 
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JMFS134E02+           TTGTGAAAACGTAAAAAGAAATTGGGAATTCCAAAGAGAATACCTTTGGGTAGATTCTTG
JMSF019A16+           TTGTGAAAACGTAAAAAGAAATTGGGAATTCCAAAGAGAATACCTTTGGGTAGATTCTTG
JMSF039N19+           TTGTGAAAACGTAAAAAGAAATTGGGAATTCCAAAGAGAATACCTTTGGGTAGATTCTTG
                      ____________________________________________________________
consensus             TTGTGAAAACGTAAAAAGAAATTGGGAATTCCAAAGAGAATACCTTTGGGTAGATTCTTG
 
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JMFS134E02+           CGTTGTTCTATGGAGGTTCACGAGCGACTGCTTAGAAGAAGCAGAAAGAAGAAAGAAGAA
JMSF019A16+           CGTTGTTCTATGGAGGTTCACGAGCGACTGCTTAGAAGAAGCAGAAAGAAGAAAGAAGAA
JMSF039N19+           CGTTGTTCTATGGAGGTTCACGAGCGACTGCTTAGAAGAAGCAGAAAGAAGAAAGAAGAA
                      ____________________________________________________________
consensus             CGTTGTTCTATGGAGGTTCACGAGCGACTGCTTAGAAGAAGCAGAAAGAAGAAAGAAGAA
 
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JMFS134E02+           GA                                                          
JMSF019A16+           GAGAGGCGCCGTATGTAACGCGCAACGTTA                              
JMSF039N19+           GAGAGGCGCCGTATGTAACGCGCAACGTTAGCTACGTTTTCATCATCCCTGTCGCCCCGA
                      ____________________________________________________________
consensus             GAGAGGCGCCGTATGTAACGCGCAACGTTAGCTACGTTTTCATCATCCCTGTCGCCCCGA