Contig 007988:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008A12Sequence227007988 (2)704012694 (2)gb|KDP34191.1|3e-50hypothetical protein JCGZ_07762 [Jatropha curcas]
JMSF038C09Sequence647007988 (2)ref|XP_009770568.1|3e-78PREDICTED: probable tocopherol cyclase, chloroplastic [Nicotiana sylvestris]925012694 (2)ref|XP_009367482.1|2e-96PREDICTED: tocopherol cyclase, chloroplastic-like [Pyrus x bretschneideri] ref|X

Alignment

This contig is upended


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JMSF038C09+ CCTGAGGAGGAACTTCCTTATTTGGAGGCCTGGCAGCTGTTTGGGCA
                      ____________________________________________________________
consensus CCTGAGGAGGAACTTCCTTATTTGGAGGCCTGGCAGCTGTTTGGGCA
 
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JMSF038C09+ ATAAAAGTATTTCCAAGTGACAGTTCATGCCTTTCACCCCAAAAGTTCTTAGACTCTGGA
                      ____________________________________________________________
consensus ATAAAAGTATTTCCAAGTGACAGTTCATGCCTTTCACCCCAAAAGTTCTTAGACTCTGGA
 
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JMSF038C09+ GTATATTGGCAAATATACTTGTCATCCGCACCAAGAATTTGAGCTCCAACTCCTGTAAAA
                      ____________________________________________________________
consensus GTATATTGGCAAATATACTTGTCATCCGCACCAAGAATTTGAGCTCCAACTCCTGTAAAA
 
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JMSF038C09+ CGACGCCCGTACTGCACCTCCTCTATTCCACTCAATGGCTTAGTGAATGCAGGATTCTCA
                      ____________________________________________________________
consensus CGACGCCCGTACTGCACCTCCTCTATTCCACTCAATGGCTTAGTGAATGCAGGATTCTCA
 
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JMSF038C09+ ACAGAATACATATAACAGAAACTCTGTCTACATTCTGGAATTGAAACCTTAAAGAACCAT
                      ____________________________________________________________
consensus ACAGAATACATATAACAGAAACTCTGTCTACATTCTGGAATTGAAACCTTAAAGAACCAT
 
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JMSF038C09+ CCCTCGAAAAACTGTCTACGAGTCCCATCAAAATGGTATCCGCTGTGAGGAGTTCGAAGA
                      ____________________________________________________________
consensus CCCTCGAAAAACTGTCTACGAGTCCCATCAAAATGGTATCCGCTGTGAGGAGTTCGAAGA
 
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JMSF038C09+ GGGCGATTGGAAGGGGTGGGGGTATAAACGGGTTTAATAGCCTCTTTAATCTCCGGCGCG
                      ____________________________________________________________
consensus GGGCGATTGGAAGGGGTGGGGGTATAAACGGGTTTAATAGCCTCTTTAATCTCCGGCGCG
 
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JMSF008A12+ CGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
JMSF038C09+ GGGTTTTCGACGGCGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
                      ____________________________________________________________
consensus GGGTTTTCGACGGCGGAATCGGGCGCCGATACTGCTTTCACTCTGAACGCCGGCGACTTC
 
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JMSF008A12+ TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
JMSF038C09+ TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
                      ____________________________________________________________
consensus TTTCCGACGCGCAGGTGCTTCCGCGGAGAGAATCTCGCAGTGTAAGATTGGGTTGGTGGA
 
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JMSF008A12+ GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
JMSF038C09+ GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
                      ____________________________________________________________
consensus GAAACGGCAGAAGAACATGCAAGGAGGGTTTCCATGGATTCGCAACAGCAGCGTCTTCTG
 
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JMSF008A12+ ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGA
JMSF038C09+ ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGACC
                      ____________________________________________________________
consensus ACGTCAGCAGAAACAGGTGGCGGAGAGACAGAACGCAGAGGGCGCGGTGGCGCTTTGACC