Contig 007977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B07Sequence661007977 (2)ref|XP_009610425.1|3e-57PREDICTED: protein NRT1/ PTR FAMILY 2.11 [Nicotiana tomentosiformis]715007977 (2)ref|XP_006347445.1|5e-92PREDICTED: probable peptide/nitrate transporter At5g62680-like [Solanum tuberos

Alignment

This contig is upended


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rJMSF036B07-                                             CTTTTTGAGAAGTTATTTTGCATGG
                      ____________________________________________________________
consensus                                                CTTTTTGAGAAGTTATTTTGCATGG
 
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rJMSF036B07-          TAATCAGTTATCAGCTAATTTATCAAACATTTTTCTACAATCAACTAGTCAAACATACTA
                      ____________________________________________________________
consensus             TAATCAGTTATCAGCTAATTTATCAAACATTTTTCTACAATCAACTAGTCAAACATACTA
 
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rJMSF036B07-          ACACAATCAGCTAACAACTATATACCAAATACCCCCAACATAATCAAACTGGAGGCTTCT
                      ____________________________________________________________
consensus             ACACAATCAGCTAACAACTATATACCAAATACCCCCAACATAATCAAACTGGAGGCTTCT
 
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rJMSF036B07-          GGTGTTGTTGGATACTATGGGGTATTTGTGTTTCCTTTATACTTGTACCACTTTGCACAC
                      ____________________________________________________________
consensus             GGTGTTGTTGGATACTATGGGGTATTTGTGTTTCCTTTATACTTGTACCACTTTGCACAC
 
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rJMSF036B07-          GCAAGAAAATATATGAGATTGATCATTTCTAATGCTGCCACTACGTGATAAAAGTAATCT
                      ____________________________________________________________
consensus             GCAAGAAAATATATGAGATTGATCATTTCTAATGCTGCCACTACGTGATAAAAGTAATCT
 
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rJMSF036B07-          AATCTCCCCTGGTTCAAATCCTGAGCCAACCACCCTGTTGTCCTATGAACAACTGATGTT
                      ____________________________________________________________
consensus             AATCTCCCCTGGTTCAAATCCTGAGCCAACCACCCTGTTGTCCTATGAACAACTGATGTT
 
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rJMSF036B07-          AAGAAGCTGCTAAGGTAGCTAGACCCTGCTAGCCCGACAAACAAGAATGAAGCGGCAATG
                      ____________________________________________________________
consensus             AAGAAGCTGCTAAGGTAGCTAGACCCTGCTAGCCCGACAAACAAGAATGAAGCGGCAATG
 
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rJMSF036B07-          CTCCTCATGTTTTCCGGGCATTGTCGGTAGAAAAACTCGTTTTCGCCTATCAGCGCAAAA
                      ____________________________________________________________
consensus             CTCCTCATGTTTTCCGGGCATTGTCGGTAGAAAAACTCGTTTTCGCCTATCAGCGCAAAA
 
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rJMSF036B07-          GCCTCCGACAGCCCCGACAGGGCCATCTGAGGAATCAGCCACAGCGCAGACATGGAAGAA
                      ____________________________________________________________
consensus             GCCTCCGACAGCCCCGACAGGGCCATCTGAGGAATCAGCCACAGCGCAGACATGGAAGAA
 
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rJMSF036B07-          ACCTCGTTCTCGGCGGCTAAGGTTCTTCTTCTGGTTTCAACTATGGCGGATGCCACCATG
                      ____________________________________________________________
consensus             ACCTCGTTCTCGGCGGCTAAGGTTCTTCTTCTGGTTTCAACTATGGCGGATGCCACCATG
 
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rJMSF036B07-          GTGATCACTGACAGGAATATCCCGATTCCCATTTTCTGGAGGAGGGTAATGCCGTCTTCT
JMSF036B07+                                                                      T
                      ____________________________________________________________
consensus             GTGATCACTGACAGGAATATCCCGATTCCCATTTTCTGGAGGAGGGTAATGCCGTCTTCT
 
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rJMSF036B07-          TTGTTGGTGTGTTTGCGGAGGATTGGGAGTATTAAGCGGTCGTAGATGGGTAGCCAGATG
JMSF036B07+           TTGTTGGTGTGTTTGCGGAGGATTGGGAGTATTAAGCGGTCGTAGATGGGTAGCCAGATG
                      ____________________________________________________________
consensus             TTGTTGGTGTGTTTGCGGAGGATTGGGAGTATTAAGCGGTCGTAGATGGGTAGCCAGATG
 
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rJMSF036B07-          GTGATGCTTAGCATTGCGAATACTATGAAG                              
JMSF036B07+           GTGATGCTTAGCATTGCGAATACTATGAAGGATGCCGGTGGGATTTGGAAGGTGGCGCCG
                      ____________________________________________________________
consensus             GTGATGCTTAGCATTGCGAATACTATGAAGGATGCCGGTGGGATTTGGAAGGTGGCGCCG
 
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JMSF036B07+           CCGAGACGCCGGTCGCTCTGGATGGCTTGGAAGACTACAAAGTTTTGAGCTTGGACGACG
                      ____________________________________________________________
consensus             CCGAGACGCCGGTCGCTCTGGATGGCTTGGAAGACTACAAAGTTTTGAGCTTGGACGACG
 
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JMSF036B07+           GAGATGTAGTAGATGACTCCAGCTCCCCATATTGGGAGGATTTTTAGTAAGCATTTCACT
                      ____________________________________________________________
consensus             GAGATGTAGTAGATGACTCCAGCTCCCCATATTGGGAGGATTTTTAGTAAGCATTTCACT
 
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JMSF036B07+           TCTTCCACCTGCTGAACGCTGCAAAGCCTCCATGGATTTTCTGCAGCACCATCTTCCTTG
                      ____________________________________________________________
consensus             TCTTCCACCTGCTGAACGCTGCAAAGCCTCCATGGATTTTCTGCAGCACCATCTTCCTTG
 
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JMSF036B07+           ATTGCGTCTTCTGCTGTTCTTATTATTGCCGCCTTGCTTAAACATCTGAAATCACAACCC
                      ____________________________________________________________
consensus             ATTGCGTCTTCTGCTGTTCTTATTATTGCCGCCTTGCTTAAACATCTGAAATCACAACCC
 
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JMSF036B07+           TCCTCACCATTAATTTCATTCGTTCTCAAGTGAATTGACACAGAAAATATAATAATGTAG
                      ____________________________________________________________
consensus             TCCTCACCATTAATTTCATTCGTTCTCAAGTGAATTGACACAGAAAATATAATAATGTAG
 
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JMSF036B07+           TATTACCTGAATTGATTTGTGAAGGGAAGCCTAGAATTGAGAGAGTTGGAGGGAGCATGG
                      ____________________________________________________________
consensus             TATTACCTGAATTGATTTGTGAAGGGAAGCCTAGAATTGAGAGAGTTGGAGGGAGCATGG
 
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JMSF036B07+           TGGAAAAGTGAGAGTGAATGTTGAGGCAAATCCAGGCGCCTCTTCTTGAAAGCGGCCACT
                      ____________________________________________________________
consensus             TGGAAAAGTGAGAGTGAATGTTGAGGCAAATCCAGGCGCCTCTTCTTGAAAGCGGCCACT
 
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JMSF036B07+           AAGACCTGAGCAACACTCTTGAAAGGGCTACCTTCGGGGACAACACCTCTGTACTTGATA
                      ____________________________________________________________
consensus             AAGACCTGAGCAACACTCTTGAAAGGGCTACCTTCGGGGACAACACCTCTGTACTTGATA
 
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JMSF036B07+           TCTTTCCTAGTGGCCACCTCTGATTGAGTCTCCCCCATGGCTAGTTGTCTTCTTGCCACC
                      ____________________________________________________________
consensus             TCTTTCCTAGTGGCCACCTCTGATTGAGTCTCCCCCATGGCTAGTTGTCTTCTTGCCACC