Contig 007971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030G06Sequence505007971 (5)
JMFS156D01Sequence435007971 (5)
JMFS156E02Sequence630007971 (5)
JMSF035E23Sequence632007971 (5)648008652 (2)ref|XP_009793559.1|2e-46PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Nicotiana sylv
JMSF047E12Sequence585007971 (5)770008652 (2)ref|XP_009793559.1|5e-67PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Nicotiana sylv

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047E12+ TGAAGCCAGCCCAAAGCCAACTCCAACTCC
JMFS156E02+ GCTTACCGTCTGCCCTGAAGCCAGCCCAAAGCCAACTCCAACTCC
JMSF035E23+ TGAAGCCAGCCCAAAGCCAACTCCAACTCC
                      ____________________________________________________________
consensus GCTTACCGTCTGCCCTGAAGCCAGCCCAAAGCCAACTCCAACTCC
 
. : . : . : . : . : . :
JMSF047E12+ AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCANCGAAGAAA
JMFS156E02+ AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
JMSF035E23+ AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
                      ____________________________________________________________
consensus AACTCCCACACCCAAAGCTGATAGAAATAGATTCTTCTGATCCATCACTCAACGAAGAAA
 
. : . : . : . : . : . :
JMSF047E12+ AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMFS030G06+ ATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMFS156E02+ AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
JMSF035E23+ AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
                      ____________________________________________________________
consensus AACAAACTTAACAAATTTGCTCACACAAACTTCACACGCAACAGGATACGATAAACAGCG
 
. : . : . : . : . : . :
JMSF047E12+ CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMFS030G06+ CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMFS156E02+ CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
JMSF035E23+ CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
                      ____________________________________________________________
consensus CAACGCAAAGTCGATCTAATTCAACTATTTGTAAAACAAATAACAAGCAAAAACTATAAA
 
. : . : . : . : . : . :
JMSF047E12+ ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMFS030G06+ ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMFS156E02+ ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
JMSF035E23+ ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
                      ____________________________________________________________
consensus ATAACTGCCATGAACTACGTAGCGCACTAGGAACGGCGAAGTAACAGGAAAACTTTAGGT
 
. : . : . : . : . : . :
JMSF047E12+ ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMFS030G06+ ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMFS156D01+ TTAAATTTCTGCTATCCCAAGAAGGCACACGGTT
JMFS156E02+ ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
JMSF035E23+ ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
                      ____________________________________________________________
consensus ATTCATATAAAAGTTTATTTTCTCTATTAAATTTCTGATATCCGAAAAAGGAACACGGTT
 
. : . : . : . : . : . :
JMSF047E12+ NTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMFS030G06+ CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMFS156D01+ CTTCAGTTCGGAAAACCCTTGACGTGCCTCCGATCCCTGCTCCCCGCCCCCGCCCCCGCC
JMFS156E02+ CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
JMSF035E23+ CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
                      ____________________________________________________________
consensus CTTCAGTTCGGAAAATGATCGAGGTGCCTCCGATCCCTGCTCTCCGCCGCCGCCGCCGCC
 
. : . : . : . : . : . :
JMSF047E12+ GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMFS030G06+ GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMFS156D01+ GTCGTCTTTGTCAAATGCCGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTTCT
JMFS156E02+ GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
JMSF035E23+ GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
                      ____________________________________________________________
consensus GTCGTCTTTGCTAAATGAAGTATGGGATTCTAGAGAACAGAGTAGTGTTACAAAACTACT
 
. : . : . : . : . : . :
JMSF047E12+ TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMFS030G06+ TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMFS156D01+ TTAATGCGCGCACGT
JMFS156E02+ TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
JMSF035E23+ TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
                      ____________________________________________________________
consensus TTAATGCGCGCACGTATATAGCAACTAGTGGATCTCTAAGTTAAAGGTCGTGGAAATGGA
 
. : . : . : . : . : . :
JMSF047E12+ AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMFS030G06+ AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMFS156E02+ AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
JMSF035E23+ AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGANACGGTGGTCGAGAGCAACAAAA
                      ____________________________________________________________
consensus AACTCCGGCAAGTTTTCAACGATTCAAGCGGCGGGGA-ACGGTGGTCGAGAGCAACAAAA
 
. : . : . : . : . : . :
JMSF047E12+ AGACAAAGAAAGTAC
JMFS030G06+ AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCA
JMFS156E02+ AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCA
JMSF035E23+ AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCAGTTAAGAAAATCTGTAATAC
                      ____________________________________________________________
consensus AGACAAAGAAAGTACAAAATGATAAGCAGCGAGCGAGGCAGTTAAGAAAATCTGTAATAC