Contig 007957:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025C18Sequence582007957 (3)ref|XP_004234346.1|2e-39PREDICTED: ABC transporter B family member 28 [Solanum lycopersicum]768010126 (5)ref|XP_009787383.1|2e-124PREDICTED: ABC transporter B family member 28 isoform X2 [Nicotiana sylvestris]
JMSF033L09Sequence661007957 (3)ref|XP_004234346.1|4e-28PREDICTED: ABC transporter B family member 28 [Solanum lycopersicum]717010126 (5)ref|XP_009787383.1|6e-120PREDICTED: ABC transporter B family member 28 isoform X2 [Nicotiana sylvestris]
JMSF047C03Sequence676007957 (3)ref|XP_006353380.1|3e-46PREDICTED: ABC transporter B family member 28-like [Solanum tuberosum]720010126 (5)ref|XP_009787383.1|1e-122PREDICTED: ABC transporter B family member 28 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF025C18+                                                                  TGGCA
JMSF047C03+                                     TCTTAAACTGGACATGACCTTTTCCCACATGGCA
                      ____________________________________________________________
consensus                                       TCTTAAACTGGACATGACCTTTTCCCACATGGCA
 
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JMFF025C18+           TTCATGTTTACAACAAAAATCACAGTGAAAATTGGCTCCAATGAGTACATAACAGCCACT
JMSF047C03+           TTCATGTTTACAACAAAAATCACAGTGAAAATTGGCTCCAATGAGTACATAACAGCCACT
JMSF033L09+                                                                      T
                      ____________________________________________________________
consensus             TTCATGTTTACAACAAAAATCACAGTGAAAATTGGCTCCAATGAGTACATAACAGCCACT
 
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JMFF025C18+           CTACCGAGCACTTTCCACAGAGGCTCAGGTCTCGCCCCTATAAGTACTTCAAAAAATCTC
JMSF047C03+           CTACCGAGCACTTTCCACAGAGGCTCAGGTCTCGCCCCTATAAGTACTTCAAAAAATCTC
JMSF033L09+           CTACCGAGCACTTTCCACAGAGGCTCAGGTCTCGCCCCTATAAGTACTTCAAAAAATCTC
                      ____________________________________________________________
consensus             CTACCGAGCACTTTCCACAGAGGCTCAGGTCTCGCCCCTATAAGTACTTCAAAAAATCTC
 
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JMFF025C18+           CCAGAGAGTAGAGGCATAGTGAGAGTGCAGGTAGTGCAGCCAATGAGGGTGAGAACAGAA
JMSF047C03+           CCAGAGAGTAGAGGCATAGTGAGAGTGCAGGTAGTGCAGCCAATGAGGGTGAGAACAGAA
JMSF033L09+           CCAGAGAGTAGAGGCATAGTGAGAGTGCAGGTAGTGCAGCCAATGAGGGTGAGAACAGAA
                      ____________________________________________________________
consensus             CCAGAGAGTAGAGGCATAGTGAGAGTGCAGGTAGTGCAGCCAATGAGGGTGAGAACAGAA
 
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JMFF025C18+           GCGGCAAGCTGCACCTTGTGGTCAGACAGAAGCCTCCATAATAGTCCCCAATTGATCACT
JMSF047C03+           GCGGCAAGCTGCACCTTGTGGTCAGACAGAAGCCTCCATAATAGTCCCCAATTGATCACT
JMSF033L09+           GCGGCAAGCTGCACCTTGTGGTCAGACAGAAGCCTCCATAATAGTCCCCAATTGATCACT
                      ____________________________________________________________
consensus             GCGGCAAGCTGCACCTTGTGGTCAGACAGAAGCCTCCATAATAGTCCCCAATTGATCACT
 
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JMFF025C18+           TCAATCGGCTGGGCAACAAAATTATCGCCGGAATCTTCGAATTTAAGCTCGTTTTCGGAT
JMSF047C03+           TCAATCGGCTGGGCAACAAAATTATCGCCGGAATCTTCGAATTTAAGCTCGTTTTCGGAT
JMSF033L09+           TCAATCGGCTGGGCAACAAAATTATCGCCGGAATCTTCGAATTTAAGCTCGTTTTCGGAT
                      ____________________________________________________________
consensus             TCAATCGGCTGGGCAACAAAATTATCGCCGGAATCTTCGAATTTAAGCTCGTTTTCGGAT
 
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JMFF025C18+           ACAAAAGCGTCAATAGCGGGGCCGGCATAAGCCGAGGATATGACGAAGCGCTTCGGCTTC
JMSF047C03+           ACAAAAGCGTCAATAGCGGGGCCGGCATAAGCCGAGGATATGACGAAGCGCTTCGGCTTC
JMSF033L09+           ACAAAAGCGTCAATAGCGGGGCCGGCATAAGCCGAGGATATGACGAAGCGCTTCGGCTTC
                      ____________________________________________________________
consensus             ACAAAAGCGTCAATAGCGGGGCCGGCATAAGCCGAGGATATGACGAAGCGCTTCGGCTTC
 
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JMFF025C18+           TGGCAGCGAGCTAGTACACGCCGTGAGGCTAGCGATGAAATGCGAAAGCGCGAGTAATGA
JMSF047C03+           TGGCAACGAGCTAGTACACGCCGTGAGGCTAGCGATGAAATGCGAAAGCGCGAGTAATGA
JMSF033L09+           TGGCAACGAGCTAGTACACGCCGTGAGGCTAGCGATGAAATGCGAAAGCGCGAGTAATGA
                      ____________________________________________________________
consensus             TGGCAACGAGCTAGTACACGCCGTGAGGCTAGCGATGAAATGCGAAAGCGCGAGTAATGA
 
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JMFF025C18+           TTTAGATGCGCCCCAAGCAAGGGGGGCTGTCGGCGGTGTTTTGGCGGCGTAAAGTGGCGG
JMSF047C03+           TTTAGATGCGCCCCAAGCAAGGGGGGCTGTCGGCGGTGTTTTGGCGGCGTAAAGTGGCGG
JMSF033L09+           TTTAGATGCGCCCCAAGCAAGGGGGGCTGTCGGCGGTGTTTTGGCGGCGTAAAGTGGCGG
                      ____________________________________________________________
consensus             TTTAGATGCGCCCCAAGCAAGGGGGGCTGTCGGCGGTGTTTTGGCGGCGTAAAGTGGCGG
 
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JMFF025C18+           AAGGGAAGAGTGAAGGAGGCGGCGGCAGCGGCAGCCATGTGTTTGTGGAATGCAAGTAAA
JMSF047C03+           AAGGGAAGAGTGAAGGAGGCGGCGGCAGCGGCAGCCATGTGTTTGTGGAATGCAAGTAAA
JMSF033L09+           AAGGGAAGAGTGAAGGAGGCGGCGGCAGCGGCAGCCATGTGTTTGTGGAATGCAAGTAAA
                      ____________________________________________________________
consensus             AAGGGAAGAGTGAAGGAGGCGGCGGCAGCGGCAGCCATGTGTTTGTGGAATGCAAGTAAA
 
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JMFF025C18+           AGCAATCGAGACAGCGAAGCGTGGAGTGTGGAAGAAG                       
JMSF047C03+           AGCAATCGAGACAGCGAAGCGTGGAGTGTGGAAGAAGAAGAAGAAGAAGTTGTGAAATGT
JMSF033L09+           AGCAATCGAGACAGCGAAGCGTGGAGTGTGGAAGAAGAAGAAGAAAAAGTTGTGAAATGT
                      ____________________________________________________________
consensus             AGCAATCGAGACAGCGAAGCGTGGAGTGTGGAAGAAGAAGAAGAAGAAGTTGTGAAATGT
 
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JMSF047C03+           TTGGGTATTTAATTGCTGCTTTTTTCACTTTTCATTTCAAT                   
JMSF033L09+           TTGGGTATTTAATTGCTGCTTTTTTCACTTTTCATTTCAATATTGCGTAAGTGAAGGAGG
                      ____________________________________________________________
consensus             TTGGGTATTTAATTGCTGCTTTTTTCACTTTTCATTTCAATATTGCGTAAGTGAAGGAGG
 
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JMSF033L09+           AAACGAGTAATAGTCTGCGCTCTATCCAATCTAATTTTCGTCGTATCCAAAAAAATAATC
                      ____________________________________________________________
consensus             AAACGAGTAATAGTCTGCGCTCTATCCAATCTAATTTTCGTCGTATCCAAAAAAATAATC