Contig 007944:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032E06Sequence678007944 (4)ref|XP_009766664.1|250PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]772007944 (4)ref|XP_009766664.1|228PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]
JMSF040P23Sequence692007944 (4)ref|XP_009766664.1|397PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]850007944 (4)ref|XP_009766664.1|429PREDICTED: uncharacterized protein LOC104217986 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032E06- ATACTAGAATGTAT
rJMSF040P23- AATACATACTAGAATGTAT
                      ____________________________________________________________
consensus AATACATACTAGAATGTAT
 
. : . : . : . : . : . :
rJMSF032E06- TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
rJMSF040P23- TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
                      ____________________________________________________________
consensus TCTAGTACATTAAACTACAGTACTTTGGTTGAATAAAGAAAACCCTTTTTCCTAGATCAC
 
. : . : . : . : . : . :
rJMSF032E06- ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
rJMSF040P23- ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
                      ____________________________________________________________
consensus ATGATCTTTAGTTCAAACTTGAGAAATAGATACATCTTTAGCTATCTTTGCTCCTCTTTG
 
. : . : . : . : . : . :
rJMSF032E06- TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
rJMSF040P23- TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
JMSF040P23+ ATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
JMSF032E06+ GGATGAGGCATGATATCTTT
                      ____________________________________________________________
consensus TTTGGCCATGTAAAGTCCCATGTGATGCATGAGCTCCTGGGGATGAGGCATGATATCTTT
 
. : . : . : . : . : . :
rJMSF032E06- GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
rJMSF040P23- GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
JMSF040P23+ GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
JMSF032E06+ GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
                      ____________________________________________________________
consensus GGTGTTGTTTGCCATGGAGGGTGGGAAGTCAAAAGTGGCACATCCCTTTGAGCAAACAAC
 
. : . : . : . : . : . :
rJMSF032E06- AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
rJMSF040P23- AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
JMSF040P23+ AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
JMSF032E06+ AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
                      ____________________________________________________________
consensus AACATCCTCCAAAGGATCAAGAAAACCTCGGTTTCTAGCCGATATGGTTGAGCAAACAAA
 
. : . : . : . : . : . :
rJMSF032E06- ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
rJMSF040P23- ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
JMSF040P23+ ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
JMSF032E06+ ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
                      ____________________________________________________________
consensus ATCCAGAACACAAATGTCTGTGCAAACTCCAACCACCAGTAAAACTTGAATCTTGTTGTC
 
. : . : . : . : . : . :
rJMSF032E06- TTTTACCCAATCAACA--AGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
rJMSF040P23- TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
JMSF040P23+ TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
JMSF032E06+ TTTTACCCAATCAACA--AGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
                      ____________________________________________________________
consensus TTTTACCCAATCAACAAAAGCGTTAGAGCCGTCTTCCTCAGCTGATCCGATGTAGCCATC
 
. : . : . : . : . : . :
rJMSF032E06- ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
rJMSF040P23- ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
JMSF040P23+ ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
JMSF032E06+ ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
                      ____________________________________________________________
consensus ATAGCAATCTTTGTGCCTGATCCTCACATTTGGTTCATTCTCTAGCCATCTCAGAGCAGG
 
. : . : . : . : . : . :
rJMSF032E06- AACAAGATTGGATCCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
rJMSF040P23- AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
JMSF040P23+ AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
JMSF032E06+ AACAAGATTGGATCCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
                      ____________________________________________________________
consensus AACAAGATTGGATTCATCAGAGCCAGAGATGCAGTGAGGAGGATAAGGGTGTTCAAGCTT
 
. : . : . : . : . : . :
rJMSF032E06- GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
rJMSF040P23- GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
JMSF040P23+ GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
JMSF032E06+ GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
                      ____________________________________________________________
consensus GTCAGGACTGTGTGAATCAAGAAAGGCAAGAACAGGCCAACCCTTTTCACAGAACAACCT
 
. : . : . : . : . : . :
rJMSF032E06- TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
rJMSF040P23- TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
JMSF040P23+ TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
JMSF032E06+ TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
                      ____________________________________________________________
consensus TGCCAGCCTAGCAGATTCATCAATCATTTCTGAAATCTGCCTGTTGGGTTCTCTTGGAGC
 
. : . : . : . : . : . :
rJMSF032E06- CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
rJMSF040P23- CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
JMSF040P23+ CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
JMSF032E06+ CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
                      ____________________________________________________________
consensus CAGATTTCCAGCTCCAACAGTGCAGAAGCCATTGATGATATCTACAAGAACTAGACCAGT
 
. : . : . : . : . : . :
rJMSF032E06- CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTA
rJMSF040P23- CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
JMSF040P23+ CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
JMSF032E06+ CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
                      ____________________________________________________________
consensus CTTGGCAGCCTCTGATATAACCACTGATTCCTCATTTAGAGGAATTTCATTCTTAATCAG
 
. : . : . : . : . : . :
rJMSF040P23- ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGAT
JMSF040P23+ ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGAT
JMSF032E06+ ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGATATGGTTTCTC
                      ____________________________________________________________
consensus ATCAATTGTCTTTAGTACCATCTTATCAACAAACTTTCTGATTTAAGGATATGGTTTCTC