Contig 007940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002D12Sequence484007940 (3)ref|XP_004251275.1|2e-59PREDICTED: V-type proton ATPase subunit a1 [Solanum lycopersicum]
JMSF031E15Sequence659007940 (3)emb|CDP08938.1|5e-67unnamed protein product [Coffea canephora]812010011 (2)gb|KDO73121.1|1e-77hypothetical protein CISIN_1g003454mg [Citrus sinensis]
JMSF047O12Sequence681007940 (3)ref|XP_009606445.1|3e-83PREDICTED: V-type proton ATPase subunit a1-like isoform X1 [Nicotiana tomentosi264010011 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047O12+ GGTATATCAGACCGCATCTCCTGCTCCATT
                      ____________________________________________________________
consensus GGTATATCAGACCGCATCTCCTGCTCCATT
 
. : . : . : . : . : . :
JMSF047O12+ AATGATGCTGAATCAGCATATTCATCATGGGAGTGCACATTTTCATCTAGTTCTGTTTCC
                      ____________________________________________________________
consensus AATGATGCTGAATCAGCATATTCATCATGGGAGTGCACATTTTCATCTAGTTCTGTTTCC
 
. : . : . : . : . : . :
JMSF047O12+ TGAGCTGATGTATTACTCTGACTTAAAACAAGAAACTCACCAGCCTTCTGCAGTACCATC
JMSF031E15+ AACAAGAAACTCACCAGCCTTCTGCAGTACCATC
                      ____________________________________________________________
consensus TGAGCTGATGTATTACTCTGACTTAAAACAAGAAACTCACCAGCCTTCTGCAGTACCATC
 
. : . : . : . : . : . :
JMSF047O12+ TTGAATTCCAATAGCTCATTATATGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
JMSF031E15+ TTGAATTCCAATAGCTCATTATGTGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
                      ____________________________________________________________
consensus TTGAATTCCAATAGCTCATTATGTGATTTCTGCAATTTCTCACTATTAGCATTCATTTCA
 
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JMSF047O12+ ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
JMSF031E15+ ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
                      ____________________________________________________________
consensus ATTAGCTCATGTTCATGTTCTGCAAGTTGTATCTCCAATTCTTCTAACTCAATATCAGGT
 
. : . : . : . : . : . :
JMSF047O12+ TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
JMFS002D12+ ACCAGCTTTATGTATCTGATCTTTAAAAAAT
JMSF031E15+ TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
                      ____________________________________________________________
consensus TGTGAAGTAGGAGAAGGAGAAAGTAGTAAACCAGCTTTGTGTATCTGATCTTTGAAAAAT
 
. : . : . : . : . : . :
JMSF047O12+ CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
JMFS002D12+ CGTAGCTTTCGCGACATTTCTGCACATCTTTTTACCTGGTTAACAAATGTCCGTTGGAAA
JMSF031E15+ CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
                      ____________________________________________________________
consensus CGCAGTTTTCTCGACATCTCTGCACATCTTTTAACCTGGTTAACAAATGTTCGTTGGAAG
 
. : . : . : . : . : . :
JMSF047O12+ GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
JMFS002D12+ GGACTCTTATCTGCATTTAAATCGCGAAATTGGAGATGGCCGAGCTGGCCGAGATAAGTA
JMSF031E15+ GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
                      ____________________________________________________________
consensus GGACTCTTTTCAGCATTTAAGTCGCGGAATTGAAGAAGGCCGAGTTGGCCGAGGTAAGTG
 
. : . : . : . : . : . :
JMSF047O12+ ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
JMFS002D12+ ATGGCGTGGTGAGCGGACTCGACGGGGATGATGAGCTGCACGAAGGTCATCTTCTCGGAG
JMSF031E15+ ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
                      ____________________________________________________________
consensus ACGGCACGGTGAACGGACTCGACCGGGATAATGAGCTGGACAAAATTCATCTTCTCCGAC
 
. : . : . : . : . : . :
JMSF047O12+ CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATT
JMFS002D12+ CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATT
JMSF031E15+ CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATTGTCCATCAACCGCGCAAT
                      ____________________________________________________________
consensus CGCATCAGATCCATCGGCGGCAAGTTGTCTATGTACTCCATTGTCCATCAACCGCGCAAT
 
. : . : . : . : . : . :
JMSF031E15+ CGCTTCTCTCTTCAGATCTATGCTACACAACCGGCCACCTTCTCTCTCGGACTCTGCTAT
                      ____________________________________________________________
consensus CGCTTCTCTCTTCAGATCTATGCTACACAACCGGCCACCTTCTCTCTCGGACTCTGCTAT
 
. : . : . : . : . : . :
JMSF031E15+ AATATATCAACCAGAGGTCTCTTTCCCGATGGTTATCTCTGTGCAATTGTGAGGAAGATT
                      ____________________________________________________________
consensus AATATATCAACCAGAGGTCTCTTTCCCGATGGTTATCTCTGTGCAATTGTGAGGAAGATT
 
. : . : . : . : . : . :
JMSF031E15+ GTTATTGGTTGATGGCTAAGTTTCAGACTCGGCAACAAACAATAAACCAAACTGCCAACC
                      ____________________________________________________________
consensus GTTATTGGTTGATGGCTAAGTTTCAGACTCGGCAACAAACAATAAACCAAACTGCCAACC