Contig 007885:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F06Sequence188007885 (4)670020140emb|CDP10874.1|2e-61unnamed protein product [Coffea canephora]
JMSF023F06Sequence669007885 (4)709007885 (4)
JMSF024F06Sequence635007885 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024F06- ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACACGTTAGAAAATA
rJMSF023F06- ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACAC-TTAGAAAATA
JMSF023F06+ TAGAAAATA
                      ____________________________________________________________
consensus ACTTTTTTTTCATAAAAGCATATAGGCCTGGTACAACACGTTAGAAAATA
 
. : . : . : . : . : . :
rJMSF024F06- TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
rJMSF023F06- TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
JMSF023F06+ TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
                      ____________________________________________________________
consensus TACAAGTAAGGAATTCCTTCAATAAACAAAAAGGCAATTCCTTAGTATCATGCATGATGC
 
. : . : . : . : . : . :
rJMSF024F06- AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
rJMSF023F06- AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
JMSF023F06+ AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
                      ____________________________________________________________
consensus AACAACAACACCACCTTAATTGCAGCAAACCCTAATTAACATAGTTACTGCAGATTTTTC
 
. : . : . : . : . : . :
rJMSF024F06- TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
rJMSF023F06- TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
JMSF023F06+ TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
                      ____________________________________________________________
consensus TCGTCACTAAAAACGTAAGACAGACACCATACTGCACCTACCTAATATATATACCATCCT
 
. : . : . : . : . : . :
rJMSF024F06- TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
rJMSF023F06- TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
JMSF023F06+ TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
                      ____________________________________________________________
consensus TATTTTCAAAGCTGCCGGCCCGGGGGCATATCATCAATACTTAACAGTAGAAATCACCTC
 
. : . : . : . : . : . :
rJMSF024F06- TTCTTTGCCGGTTTCAGGGTTGAGGNGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
rJMSF023F06- TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
JMSF023F06+ TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
                      ____________________________________________________________
consensus TTCTTTGCCGGTTTCAGGGTTGAGGTGTAGGGTGTAAGCCCGGGGGCCCTGATAGGTGGT
 
. : . : . : . : . : . :
rJMSF024F06- GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTANCANCAAATTTAGGTTTGTGATG
rJMSF023F06- GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
JMSF023F06+ GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
                      ____________________________________________________________
consensus GAAGAACATAGTTTTAGGTTGTTGGGGTTCTGAGGTAGCAGCAAATTTAGGTTTGTGATG
 
. : . : . : . : . : . :
rJMSF024F06- ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
rJMSF023F06- ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
JMSF023F06+ ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
                      ____________________________________________________________
consensus ATAAGTAGTAGGATAAAAGGGCTTCTGTGGGTAATAGTTAATAGGTTGAGGAGGATAAAG
 
. : . : . : . : . : . :
rJMSF024F06- ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
rJMSF023F06- ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
JMSF023F06+ ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
                      ____________________________________________________________
consensus ATGATGCCTGGGGTAGGGTGTTCTTCCATAGATTGGTTCCCTATCCAAATGTTGAAACCC
 
. : . : . : . : . : . :
rJMSF024F06- ATCTAAGCCTATATCCACAAGCTTCNGCTTTGGGNAAGCTATTCTTGCCATTTCAGAAAG
rJMSF023F06- ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
JMSF023F06+ ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
                      ____________________________________________________________
consensus ATCTAAGCCTATATCCACAAGCTTCTGCTTTGGGTAAGCTATTCTTGCCATTTCAGAAAG
 
. : . : . : . : . : . :
rJMSF024F06- CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGA
JMFF003F06+ GAAGAAGAAGAAGAAGAAGAAGA
rJMSF023F06- CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
JMSF023F06+ CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
                      ____________________________________________________________
consensus CTTCTGGGTTTAATTAGGGTCTAGTAGTGTGTAGTGTGAAGAAGAAGAAGTAGAAGAAGA
 
. : . : . : . : . : . :
JMFF003F06+ AGAAGAAGAAGAAGAAGAAGAAGAAAG
rJMSF023F06- AGAAGAAGAAGAAGAAGAAGAAGAAAGA
JMSF023F06+ AGAAGAAGAAGAAGAAGAAGAAGAAAGAAACCTAATTAGCTTTGTGTGTATGTTGCAGTC
                      ____________________________________________________________
consensus AGAAGAAGAAGAAGAAGAAGAAGAAAGAAACCTAATTAGCTTTGTGTGTATGTTGCAGTC