Contig 007873:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027C18Sequence496007873 (3)ref|XP_009768551.1|3e-36PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana757006871 (3)ref|XP_010271641.1|1e-77PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu
JMSF012J07Sequence250007873 (3)775006871 (3)ref|XP_010683711.1|9e-72PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Beta vulg
JMSF021G03Sequence695007873 (3)ref|XP_009768551.1|3e-70PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana759006871 (3)ref|XP_010271641.1|1e-80PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu

Alignment

This contig is upended


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JMSF021G03+                                    TAAAATGACGGTGGGACCAGATTTTGCGAAAACCA
                      ____________________________________________________________
consensus                                      TAAAATGACGGTGGGACCAGATTTTGCGAAAACCA
 
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JMSF021G03+           GCTCAGAAACCTCTCCACCCATCAGTTTCACAAGCTCCTCATGTACAATTTTGACCAATT
                      ____________________________________________________________
consensus             GCTCAGAAACCTCTCCACCCATCAGTTTCACAAGCTCCTCATGTACAATTTTGACCAATT
 
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JMSF021G03+           GCTGATCAGGTCTCACTCCCCGAATCAAGCTAGTACCAACAGCATTTTCAGTAACAGATT
                      ____________________________________________________________
consensus             GCTGATCAGGTCTCACTCCCCGAATCAAGCTAGTACCAACAGCATTTTCAGTAACAGATT
 
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JMFF027C18+                   CTTCTCACAACTGGGAGACTGACATCTGCTTCCAGAAGAGCCCTCCTAATGT
JMSF021G03+           CAATAAACCTTCTCACAACTGGGAGACTGACATCTGCTTCCAGAAGAGCCCTCCTAATGT
                      ____________________________________________________________
consensus             CAATAAACCTTCTCACAACTGGGAGACTGACATCTGCTTCCAGAAGAGCCCTCCTAATGT
 
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JMFF027C18+           CTCTCATAGGTTCAGCAATGTTTTCCTTTGTCAAGGCCTCTTCCCCTTTGAGCTTGTTCC
JMSF021G03+           CTCTCATAGGTTCAGCAATGTTTTCCTTTGTCAAGGCCTCTTCCCCTTTGAGCTTGTTCC
                      ____________________________________________________________
consensus             CTCTCATAGGTTCAGCAATGTTTTCCTTTGTCAAGGCCTCTTCCCCTTTGAGCTTGTTCC
 
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JMFF027C18+           AAGCAGATTCAAGTCCGCTGGTGAGCTGCCCAAACATATCCGCTCTAATCACACTCTTTC
JMSF021G03+           AAGCAGATTCAAGTCCGCTGGTGAGCTGCCCAAACATATCCGCTCTAATCACACTCTTTC
                      ____________________________________________________________
consensus             AAGCAGATTCAAGTCCGCTGGTGAGCTGCCCAAACATATCCGCTCTAATCACACTCTTTC
 
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JMSF012J07+                      ACTGCATTCTTTAAATTTATCACCCTCCATGCCTCCCTAGTGAAAGAGT
JMFF027C18+           TTCTAGAATTTACTGCATTCTTTAAATTTATCACCCTCCATGCCTCCCTAGTGAAAGAGT
JMSF021G03+           TTCTAGAATTTACTGCATTCTTTAAATTTATCACCCTCCATGCCTCCCTAGTGAAAGAGT
                      ____________________________________________________________
consensus             TTCTAGAATTTACTGCATTCTTTAAATTTATCACCCTCCATGCCTCCCTAGTGAAAGAGT
 
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JMSF012J07+           TTCGAGAGGAGAAAGAGAGGGAATGAGTAGAACCAATCCAAGAAGAAGACGAAGGAGGAT
JMFF027C18+           TTCGAGAGGAGAAAGAGAGGGAATGAGTAGAACCAATCCAAGAAGAAGACGAAGGAGGAT
JMSF021G03+           TTCGAGAGGAGAAAGAGAGGGAATGAGTAGAACCAATCCAAGAAGAAGACGAAGGAGGAT
                      ____________________________________________________________
consensus             TTCGAGAGGAGAAAGAGAGGGAATGAGTAGAACCAATCCAAGAAGAAGACGAAGGAGGAT
 
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JMSF012J07+           TATATGACCTTCTAGGGATGTCTGATAGGTAGACTTTGGTCAGTGGAAGCGAAGAAAATG
JMFF027C18+           TATATGACCTTCTAGGGATGTCTGATAGGTAGACTTTGGTCAGTGGAAGCGAAGAAAATG
JMSF021G03+           TATATGACCTTCTAGGGATGTCTGATAGGTAGACTTTGGTCAGTGGAAGCGAAGAAAATG
                      ____________________________________________________________
consensus             TATATGACCTTCTAGGGATGTCTGATAGGTAGACTTTGGTCAGTGGAAGCGAAGAAAATG
 
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JMSF012J07+           AAGAAGAAGAGAAATGGTGGGAAGCAACGGTCGACGTGAAAGCTTCCATGGATTTTTTTT
JMFF027C18+           AAGAAGAAGAGAAATGGTGGGAAGCAACGGTCGACGTGAAAGCTTCCATGGATTTTTTTT
JMSF021G03+           AAGAAGAAGAGAAATGGTGGGAAGCAACGGTCGACGTGAAAGCTTCCATGGATTTTTTTT
                      ____________________________________________________________
consensus             AAGAAGAAGAGAAATGGTGGGAAGCAACGGTCGACGTGAAAGCTTCCATGGATTTTTTTT
 
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JMSF012J07+           AATTTTTTTGACGAATCAAT                                        
JMFF027C18+           AATTTTTTTGACGAATCAATGGAAAATGCAGGATTTGGCAGCAAAACTTCTACTCTATGA
JMSF021G03+           AATTTTTTTGACGAATCAATGGAAAATGCAGGATTTGGCAGCAAAACTTCTACTCTATGA
                      ____________________________________________________________
consensus             AATTTTTTTGACGAATCAATGGAAAATGCAGGATTTGGCAGCAAAACTTCTACTCTATGA
 
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JMFF027C18+           CAGTTGGGTCGTCACTCTGGTGTT                                    
JMSF021G03+           CAGTTGGGTCGTCACTCTGGTGTTATCCATCCAGTTGCAGCGGGGAAAATTATCAACATC
                      ____________________________________________________________
consensus             CAGTTGGGTCGTCACTCTGGTGTTATCCATCCAGTTGCAGCGGGGAAAATTATCAACATC