Contig 007844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G10Sequence341007844 (5)gb|AFW90598.1|3e-22E3 ubiquitin ligase [Solanum tuberosum]667007844 (5)ref|XP_004232585.1|3e-31PREDICTED: RING-H2 finger protein ATL8-like [Solanum lycopersicum]
JMFN003K14Sequence623007844 (5)emb|CDP01769.1|1e-61unnamed protein product [Coffea canephora]
JMFN008E21Sequence638007844 (5)emb|CDP01769.1|2e-61unnamed protein product [Coffea canephora]
JMSF018B04Sequence248007844 (5)ref|XP_010270525.1|1e-09PREDICTED: RING-H2 finger protein ATL80 [Nelumbo nucifera]716017120ref|XP_009775127.1|2e-41PREDICTED: RING-H2 finger protein ATL80-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF001G10- TTCTTTTTTTATACTTTGACTACTATGTACAGTGCCAACTTATATAC
                      ____________________________________________________________
consensus TTCTTTTTTTATACTTTGACTACTATGTACAGTGCCAACTTATATAC
 
. : . : . : . : . : . :
rJMFF001G10- GCAAATCCTAATCAAGGAGAGTTTGAACGGTGATTGACATCTCTTCTTCCCCTGCCAAAC
                      ____________________________________________________________
consensus GCAAATCCTAATCAAGGAGAGTTTGAACGGTGATTGACATCTCTTCTTCCCCTGCCAAAC
 
. : . : . : . : . : . :
rJMFF001G10- CCTACCCGAATACCCGGAACTACAATCAAGGCCGCAGCTCCTCCGCTAACGGCGGAGCTG
                      ____________________________________________________________
consensus CCTACCCGAATACCCGGAACTACAATCAAGGCCGCAGCTCCTCCGCTAACGGCGGAGCTG
 
. : . : . : . : . : . :
rJMFF001G10- TTACTAGACAAGCCGGAGTTCTCAGATGGCGTGGCCATGCCGGAATTGTTTGCTCCCACC
JMFN008E21+ GCTCCCACC
                      ____________________________________________________________
consensus TTACTAGACAAGCCGGAGTTCTCAGATGGCGTGGCCATGCCGGAATTGTTTGCTCCCACC
 
. : . : . : . : . : . :
rJMFF001G10- CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
JMFN008E21+ CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
                      ____________________________________________________________
consensus CTCGCATAAACTGAATTGTCAGATTACATGCTACAATTGAACTATTTCCAGTTAAAGTAG
 
. : . : . : . : . : . :
rJMFF001G10- AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
JMFN008E21+ AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
                      ____________________________________________________________
consensus AATATTAATGGCGCTTTGAGATTGTTCCCCGGCTCCGGCGGGCGAGACCGACGGAATTTC
 
. : . : . : . : . : . :
rJMFF001G10- CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
JMFN003K14+ GCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
JMFN008E21+ CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
                      ____________________________________________________________
consensus CTTGCAGCCGCACTTCCGGCAGCGGGCGACGACGAGGATCTGCCGGCACGAGGGGCAGGA
 
. : . : . : . : . : . :
rJMFF001G10- GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
JMFN003K14+ GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
JMFN008E21+ GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
                      ____________________________________________________________
consensus GGAGTGGGACCCGAGCCAGGTGTCGATGCATTGCACATGGAAGCCGTGGCGACACTGCGG
 
. : . : . : . : . : . :
rJMFF001G10- CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAATCCCGCCG
JMFN003K14+ CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
JMFN008E21+ CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
                      ____________________________________________________________
consensus CAGCACTCGGATCTCGTCGCCTTCCTCGTACTCCGTCAGGCATATGGCGCAAT-CCGCCG
 
. : . : . : . : . : . :
rJMFF001G10- GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFN003K14+ GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFN008E21+ GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
JMFF001G10+ CGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
                      ____________________________________________________________
consensus GGATTTCCTTCTCGGCGGCGGCGGCGAAGGAGGGGCCGTAAGTGAACTTCGGCAGCGACC
 
. : . : . : . : . : . :
rJMFF001G10- GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFN003K14+ GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFN008E21+ GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMFF001G10+ GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
JMSF018B04+ GCCGTTTG
                      ____________________________________________________________
consensus GGAGCACTTTCTTCTTCAGGCCTTTGTTCGACGACGGCTGTCCGCTTGCGCCGCCGTTTG
 
. : . : . : . : . : . :
rJMFF001G10- CCCCGGCGCGGATCCTCCGG
JMFN003K14+ CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMFN008E21+ CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMFF001G10+ CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
JMSF018B04+ CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
                      ____________________________________________________________
consensus CCCCGGCGCGGATCCTCCGGAGCCACGCACACCTAGCTACCATAACAAGCCCTACCACAC
 
. : . : . : . : . : . :
JMFN003K14+ ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMFN008E21+ ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMFF001G10+ ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
JMSF018B04+ ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
                      ____________________________________________________________
consensus ATATCACGGCGCACAGTAGCGCCGCTAGGATGACTATAAAATCAGACTCCGGAGTTGCTG
 
. : . : . : . : . : . :
JMFN003K14+ ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATG
JMFN008E21+ ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
JMFF001G10+ ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
JMSF018B04+ ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
                      ____________________________________________________________
consensus ACGACGACGGTGGCTCCGTCGCCGCCGTCTTCGTCGGCGACGGTGGATTCGGTGATGAGT
 
. : . : . : . : . : . :
JMFN008E21+ GGTTGCCGGAGAGAAATCTACGTGGAAG
JMFF001G10+ GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCAC
JMSF018B04+ GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCACC
                      ____________________________________________________________
consensus GGTTGCCGGAGAGAAATCTACGTGGAAGAGCCATATAAAGTATGAAATATGAAGTTCACC