Contig 007843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047H22Sequence641007843 (4)emb|CDP02679.1|2e-11unnamed protein product [Coffea canephora]615013839 (4)
JMSF011C19Sequence365007843 (4)emb|CDP02679.1|6e-05unnamed protein product [Coffea canephora]801013839 (4)ref|XP_009606293.1|3e-12PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis]
JMSF018A01Sequence516007843 (4)emb|CDP02679.1|3e-05unnamed protein product [Coffea canephora]763013839 (4)ref|XP_009606293.1|1e-07PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis]
JMSF018A05Sequence303007843 (4)762013839 (4)ref|XP_009606293.1|2e-09PREDICTED: transcription factor GTE2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF047H22+                            AAAACGCCCTGGACCCGTTCCAGATCGAAGATCAAGCGTGTTT
                      ____________________________________________________________
consensus                              AAAACGCCCTGGACCCGTTCCAGATCGAAGATCAAGCGTGTTT
 
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JMFF047H22+           AAGCTCCTTAATCTCCCGTCTAGAGTAGGAACCCAGATTAAAGGTCACATACTCTCTATG
                      ____________________________________________________________
consensus             AAGCTCCTTAATCTCCCGTCTAGAGTAGGAACCCAGATTAAAGGTCACATACTCTCTATG
 
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JMFF047H22+           GAAGGAGCCATTGCGATCAATCAAACCTTCCGGCAGCGGCGGTACGGACCTCTGTGACTG
JMSF018A01+                                     CTTCCGGCAGCGGCGGTACGGACCTCTGTGACTG
                      ____________________________________________________________
consensus             GAAGGAGCCATTGCGATCAATCAAACCTTCCGGCAGCGGCGGTACGGACCTCTGTGACTG
 
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JMFF047H22+           ATGATTAAAGTGCCGGCGCTGAGGTTTGGTTGAACCTTCATGGATCCGTTTGGCGGCAAC
JMSF018A01+           ATGATTAAAGTGCCGGCGCTGAGGTTTGGTTGAACCTTCATGGATCCGTTTGGCGGCAAC
                      ____________________________________________________________
consensus             ATGATTAAAGTGCCGGCGCTGAGGTTTGGTTGAACCTTCATGGATCCGTTTGGCGGCAAC
 
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JMFF047H22+           GTCGAAATTGCTACCACCAGCCCTAATGCTAGGGTTAAATGAACAATGGCTAGGGTTAGG
JMSF011C19+                                                             TAGGGTTAGG
JMSF018A01+           GTCGAAATTGCTACCACCAGCCCTAATGCTAGGGTTAAATGAACAATGGCTAGGGTTAGG
                      ____________________________________________________________
consensus             GTCGAAATTGCTACCACCAGCCCTAATGCTAGGGTTAAATGAACAATGGCTAGGGTTAGG
 
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JMFF047H22+           GTTAGGGTTGATTCGGCCATAAAAATGAGGGTTATTGGTGGTGGAATTTGGGTTGAATTC
JMSF011C19+           GTTAGGGTTGATTCGNCCATAAAAATGAGGGTTATTGGTGGTGGAATTTGGGTTGAATTC
JMSF018A05+                                                                    TTC
JMSF018A01+           GTTAGGGTTGATTCGGCCATAAAAATGAGGGTTATTGGTGGTGGAATTTGGGTTGAATTC
                      ____________________________________________________________
consensus             GTTAGGGTTGATTCGGCCATAAAAATGAGGGTTATTGGTGGTGGAATTTGGGTTGAATTC
 
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JMFF047H22+           ACTCATACATAACTTCCG-TTCACTCCAATGTGGTTCATTCCTGCTAGCCAAAACAGCCG
JMSF011C19+           ACTCATACATAACTTCCG-TTCACTCCAATGTGGTTCATTCCTGCTAGCCAAAACAGCCG
JMSF018A05+           ACTCATACATAACTTCCGTTTCACTCCAATGTGGTTCATTCNTGCTAGCCAAAACAGCCG
JMSF018A01+           ACTCATACATAACTTCCG-TTCACTCCAATGTGGTTCATTCCTGCTAGCCAAAACAGCCG
                      ____________________________________________________________
consensus             ACTCATACATAACTTCCG-TTCACTCCAATGTGGTTCATTCCTGCTAGCCAAAACAGCCG
 
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JMFF047H22+           ATGCCATAGAAGAAACAGAGCAGACTAGCAACGGCGTTTCGGAATGCCAGAGATTCCGGC
JMSF011C19+           ATGCCATAGAAGAAACAGAGCAGACTAGCAACGGCGTTTCGGAATGCCAGAGATTCCGGC
JMSF018A05+           ATGCCATAGAAGAAACAGAGCAGACTAGCAACGGCGTTTCGGAATGCCAGAGATTCCGGC
JMSF018A01+           ATGCCATAGAAGAAACAGAGCAGACTAGCAACGGCGTTTCGGAATGCCAGAGATTCCGGC
                      ____________________________________________________________
consensus             ATGCCATAGAAGAAACAGAGCAGACTAGCAACGGCGTTTCGGAATGCCAGAGATTCCGGC
 
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JMFF047H22+           GTCTACGTCTTAATCTCGGACAGAACTCCGTCGAATGTCATGATGAAATCGCCGGAAAAC
JMSF011C19+           GTCTACGTCTTAATCTCGGACAGAACTCCGTCGAATGTCATGATGAAATCGCCGGAAAAC
JMSF018A05+           GTCTACGTCTTAATCTCGGACAGAACTCCGTCGAATGTCATGATGAAATCGCCGGAAAAC
JMSF018A01+           GTCTACGTCTTAATCTCGGACAGAACTCCGTCGAATGTCATGATGAAATCGCCGGAAAAC
                      ____________________________________________________________
consensus             GTCTACGTCTTAATCTCGGACAGAACTCCGTCGAATGTCATGATGAAATCGCCGGAAAAC
 
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JMFF047H22+           TCAACCACCACCATGGAGAAATCTCTGAAATAAATTGAAAATAAAATTTTAAAAAAATGA
JMSF011C19+           TCAACCACCACCATGGAGAAATCTCTGAAATAAATTGAAAATAAAATTTTAAAAAAATGA
JMSF018A05+           TCAACCACCACCATGGAGAAATCTCTGAAATAAATTGAAAATAAAATTTTAAAAAAATGA
JMSF018A01+           TCAACCACCACCATGGAGAAATCTCTGAAATAAATTGAAAATAAAATTTTAAAAAAATGA
                      ____________________________________________________________
consensus             TCAACCACCACCATGGAGAAATCTCTGAAATAAATTGAAAATAAAATTTTAAAAAAATGA
 
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JMFF047H22+           TTGAAAATTAAGGGGCGAGGGTTTCGAAGAACCTCTTTCACCTCGCCAGAGCA       
JMSF011C19+           TTGAAAATTAAGGGGCGAGGGTTTCGAAGAACCTCTTTCACCTCGCCAGAGCA       
JMSF018A05+           TTGAAAATTAAGGGGCGAGGGTTTCGAAGAACCTCTTTCACCTCGCCAGAGCA       
JMSF018A01+           TTGAAAATTAAGGGGCGAGGGTTTCGAAGAACCTCTTTCACCTCGCCAGAGCAGTGAACC
                      ____________________________________________________________
consensus             TTGAAAATTAAGGGGCGAGGGTTTCGAAGAACCTCTTTCACCTCGCCAGAGCAGTGAACC