Contig 007823:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P18Sequence300007823 (3)ref|XP_009760570.1|8e-20PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]727002904 (3)ref|XP_009760570.1|4e-109PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]
JMSF015F17Sequence420007823 (3)ref|XP_009760570.1|1e-49PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]737002904 (3)ref|XP_009760570.1|2e-116PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]
JMSF031D19Sequence665007823 (3)ref|XP_009760570.1|2e-104PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]769002904 (3)ref|XP_009760570.1|3e-110PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF031D19+                                                         CCAAGCNATCACCG
                      ____________________________________________________________
consensus                                                           CCAAGCNATCACCG
 
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JMSF031D19+           AGTTCTTAAGCTGGCTCTGCAGGAACCTNTGCAACGGGAACTGGAACGCGAAGCAGAAGT
                      ____________________________________________________________
consensus             AGTTCTTAAGCTGGCTCTGCAGGAACCTNTGCAACGGGAACTGGAACGCGAAGCAGAAGT
 
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JMSF031D19+           GCAGCGGCAAGAACGCCATGACCACCACCCCCGACAGCTCCGACACGTCCTCCGCCTGCC
                      ____________________________________________________________
consensus             GCAGCGGCAAGAACGCCATGACCACCACCCCCGACAGCTCCGACACGTCCTCCGCCTGCC
 
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JMSF031D19+           CCAGCGCCTTCAGCACCGGCGTCGNGAAGAAAAACAACGGCAGCATCACCACACAGCACA
                      ____________________________________________________________
consensus             CCAGCGCCTTCAGCACCGGCGTCGNGAAGAAAAACAACGGCAGCATCACCACACAGCACA
 
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JMSF031D19+           GAAACAGAACCACCCACGACCGCTGCAGATATATCCCCAACATGTCATACCTTTTCGCCC
                      ____________________________________________________________
consensus             GAAACAGAACCACCCACGACCGCTGCAGATATATCCCCAACATGTCATACCTTTTCGCCC
 
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JMSF031D19+           CGAACGCTTGCCCGCACAGCGTCTCCAGGGCGCTAGCCATGCCCAGCATCAACCCGAAGT
JMSF015F17+           CGAACGCTTGCCCGCACAGCGTCTCCAGGGCGCTAGCCATGCCCAGCATCAACCCGAAGT
                      ____________________________________________________________
consensus             CGAACGCTTGCCCGCACAGCGTCTCCAGGGCGCTAGCCATGCCCAGCATCAACCCGAAGT
 
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JMSF031D19+           CGAACCCCAGAATCACGTTGCTGGCGATCGACATCGCCGCCAGTTCCAGGTCTCCCAGGT
JMSF015F17+           CGAACCCCAGAATCACGTTGCTGGCGATCGACATCGCCGCCAGTTCCAGGTCTCCCAGGT
                      ____________________________________________________________
consensus             CGAACCCCAGAATCACGTTGCTGGCGATCGACATCGCCGCCAGTTCCAGGTCTCCCAGGT
 
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JMSF031D19+           GGCCGGCGAATGCTTGGGTGATCACGAACATGGAGTACGAAGCTATACGGCTGAAGATAG
JMFF033P18+                          GGGTGATCACGAACATGGAGTACGAAGCTATACGGCTGAAGATAG
JMSF015F17+           GGCCGGCGAATGCTTGGGTGATCACGAACATGGAGTACGAAGCTATACGGCTGAAGATAG
                      ____________________________________________________________
consensus             GGCCGGCGAATGCTTGGGTGATCACGAACATGGAGTACGAAGCTATACGGCTGAAGATAG
 
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JMSF031D19+           CCGGCCCCACGATCTGCCATAGCTTCTTTGATTCCACCCAAAACCTCCCCAAAAACTTCT
JMFF033P18+           CCGGCCCCACGATCTGCCATAGCTTCTTTGATTCCACCCAAAACCTCCCCAAAAACTTCT
JMSF015F17+           CCGGCCCCACGATCTGCCATAGCTTCTTTGATTCCACCCAAAACCTCCCCAAAAACTTCT
                      ____________________________________________________________
consensus             CCGGCCCCACGATCTGCCATAGCTTCTTTGATTCCACCCAAAACCTCCCCAAAAACTTCT
 
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JMSF031D19+           TCTCCTCTTCTTCTTCTTCTTCAATGTTATTTTCGACGACCTGGGCCGATGAGTAGTCTA
JMFF033P18+           TCTCCTCTTCTTCTTCTTCTTCAATGTTATTTTCGACGACCTGGGCCGATGAGTAGTCTA
JMSF015F17+           TCTCCTCTTCTTCTTCTTCTTCAATGTTATTTTCGACGACCTGGGCCGATGAGTAGTCTA
                      ____________________________________________________________
consensus             TCTCCTCTTCTTCTTCTTCTTCAATGTTATTTTCGACGACCTGGGCCGATGAGTAGTCTA
 
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JMSF031D19+           ATAACGGCACCTTATTTTCGTCCATGCTGCCATTGCCAGACATTTTCTTAGCTCTTGATA
JMFF033P18+           ATAACGGCACCTTATTTTCGTCCATGCTGCCATTGCCAGACATTTTNTTAGCTCTTGATA
JMSF015F17+           ATAACGGCACCTTATTTCCGTCCATGCTGCCATTGCCAGACATTTTCTTAGCTCTTGATA
                      ____________________________________________________________
consensus             ATAACGGCACCTTATTTTCGTCCATGCTGCCATTGCCAGACATTTTCTTAGCTCTTGATA
 
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JMSF031D19+           GAGCCGGCAGGAGCAAATAAACAGAGAAGGAGAAAAGGAAGAGAAGAGCT          
JMFF033P18+           GAGCCGGCAGGAGCAAATAAACAGAGAAGGAGAAAAGGAAGAGAAGAGCTACTGAAATT 
JMSF015F17+           GAGCCGGCAGGAGCAAATAAACAGAGAAGGAGAAAAGGAAGAGAAGAGCTACTGAAATTC
                      ____________________________________________________________
consensus             GAGCCGGCAGGAGCAAATAAACAGAGAAGGAGAAAAGGAAGAGAAGAGCTACTGAAATTC