Contig 007797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015D12Sequence441007797 (7)emb|CDP11432.1|6e-15unnamed protein product [Coffea canephora]
JMFF038A03Sequence561007797 (7)ref|XP_003634523.1|130PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]522007797 (7)ref|XP_003634523.1|131PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]
JMFN041B21Sequence611007797 (7)ref|XP_003634523.1|130PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]
JMFN041D24Sequence556007797 (7)ref|XP_003634523.1|130PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]
JMSF011M17Sequence292007797 (7)ref|XP_002306717.1|2e-24hypothetical protein POPTR_0005s21760g [Populus trichocarpa] gb|EEE93713.1| hypo681007797 (7)ref|XP_003634523.1|130PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP015D12+ ACCAAA
rJMSF011M17- GTTACGAAGATCCGAACCAAA
                      ____________________________________________________________
consensus GTTACGAAGATCCGAACCAAA
 
. : . : . : . : . : . :
JMFN041B21+ TATTGTATCTTACAATTCATTGGGAACAAAATTAAAA
JMCP015D12+ TCTACTTGAATGATAAGATTGATTATTGTATCTTACAATTCATTGGGAACAAAATTAAAA
rJMSF011M17- TCTACTTGAATGATAAGATTGATTATTGTATCTTACAATTCATTGGGAACAAAATTAAAA
                      ____________________________________________________________
consensus TCTACTTGAATGATAAGATTGATTATTGTATCTTACAATTCATTGGGAACAAAATTAAAA
 
. : . : . : . : . : . :
JMFN041B21+ GAGTTGAAACACAAATTAAACCACTCAAAATGATCATCATCAGTAGATATATCCAAACAC
JMFN041D24+ CTCAAAATGATCATCATCAGTAGATATATCCAAACAC
JMFF038A03+ TATATCCAAACAC
JMCP015D12+ GAGTTGAAACACAAATTAAACCACTCAAAATGATCATCATCAGTAGATATATCCAAACAC
rJMSF011M17- GAGTTGAAACACAAATTAAACCACTCAAAATGATCATCATCAGTAGATATATCCAAACAC
                      ____________________________________________________________
consensus GAGTTGAAACACAAATTAAACCACTCAAAATGATCATCATCAGTAGATATATCCAAACAC
 
. : . : . : . : . : . :
JMFN041B21+ CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
JMFN041D24+ CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
JMFF038A03+ CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
rJMFF038A03- CACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
JMCP015D12+ CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
rJMSF011M17- CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
                      ____________________________________________________________
consensus CCCTATGAGGTAAAATTCACCGACGCAGTCTCTCGTTTCATACGATCATCAAAAACAAAA
 
. : . : . : . : . : . :
JMFN041B21+ ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
JMFN041D24+ ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
JMFF038A03+ ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
rJMFF038A03- ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
JMCP015D12+ ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
rJMSF011M17- ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
                      ____________________________________________________________
consensus ACAATATACGATGAGGATCGAAGGGAATGAAACCTTAGCTTAATTAGGAAAAAAAGAAGA
 
. : . : . : . : . : . :
JMFN041B21+ AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
JMFN041D24+ AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
JMFF038A03+ AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
rJMFF038A03- AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
JMCP015D12+ AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
rJMSF011M17- AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
                      ____________________________________________________________
consensus AGATCGAGAAGAAAAACATTACATTTATATATATAGAGAGAGAGAGAGAGATTAAGGGTG
 
. : . : . : . : . : . :
JMFN041B21+ ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
JMFN041D24+ ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
JMFF038A03+ ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
rJMFF038A03- ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
JMCP015D12+ ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
rJMSF011M17- ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
                      ____________________________________________________________
consensus ACTAGCTAGAGGCCATAACGAATATCGTTGAGTTTGGTCTTGATCCACTTGAAGCTTTCT
 
. : . : . : . : . : . :
JMFN041B21+ CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
JMFN041D24+ CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
JMFF038A03+ CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
rJMFF038A03- CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
JMCP015D12+ CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
rJMSF011M17- CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
JMSF011M17+ GGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
                      ____________________________________________________________
consensus CTAACAGTGGACTTAACTTTACCTTCAGTAGTGAAGGTGTTATAAGACGCAATTCTCTTC
 
. : . : . : . : . : . :
JMFN041B21+ TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
JMFN041D24+ TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
JMFF038A03+ TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
rJMFF038A03- TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
JMCP015D12+ TTCCTCTTCATCTC
rJMSF011M17- TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
JMSF011M17+ TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
                      ____________________________________________________________
consensus TTCCTCTTCATCTCGGGATGGTTGGAGGGGGCGAAGCCGTCTCCTTTGGTGCTGGGGCCG
 
. : . : . : . : . : . :
JMFN041B21+ TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
JMFN041D24+ TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
JMFF038A03+ TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
rJMFF038A03- TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
rJMSF011M17- TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
JMSF011M17+ TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
                      ____________________________________________________________
consensus TTGAAATTGTAGGTGTTAGAGCGGTCTTGGAACCCAAAGTCGGCGGAGTATTGTGGGAAT
 
. : . : . : . : . : . :
JMFN041B21+ GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
JMFN041D24+ GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
JMFF038A03+ GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
rJMFF038A03- GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
rJMSF011M17- GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
JMSF011M17+ GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
                      ____________________________________________________________
consensus GATCTGCTCTTCTCCATACACTTTACTCGATCGATCTCCAACCTTCTTCTACCTACCGCG
 
. : . : . : . : . : . :
JMFN041B21+ CTAGCTCTTCTCTTGGACTACTATGTACTATGTA
JMFN041D24+ CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAG
JMFF038A03+ CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAGCGTGTGGACGTTTGGTTTTC
rJMFF038A03- CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAGCGTGTGGACGTTTGGTTTTC
rJMSF011M17- CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAGCGTGTGGACGTTTGGTTTTC
JMSF011M17+ CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAGCGTGTGGACGTTTGGTTTTCC
                      ____________________________________________________________
consensus CTAGCTCTTCTCTTGGACTACTATGTACTATGTAGCTAGCGTGTGGACGTTTGGTTTTCC