Contig 007762:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS007G05Sequence626007762 (6)ref|XP_010648448.1|2e-81PREDICTED: retinoblastoma-related protein isoform X2 [Vitis vinifera] emb|CBI207
JMFS021D03Sequence631007762 (6)ref|XP_009774793.1|3e-56PREDICTED: retinoblastoma-related protein 1 isoform X4 [Nicotiana sylvestris]
JMFS122A12Sequence541007762 (6)ref|XP_004307078.1|1e-40PREDICTED: retinoblastoma-related protein [Fragaria vesca subsp. vesca]
JMSF007A08Sequence257007762 (6)790008598 (4)ref|XP_011086897.1|2e-99PREDICTED: retinoblastoma-related protein [Sesamum indicum] ref|XP_011086898.1|
JMSF034N05Sequence657007762 (6)ref|XP_009774793.1|4e-62PREDICTED: retinoblastoma-related protein 1 isoform X4 [Nicotiana sylvestris]655008598 (4)emb|CDP18998.1|2e-70unnamed protein product [Coffea canephora]
JMSF037F23Sequence681007762 (6)ref|NP_001266162.1|4e-75retinoblastoma-related protein 1 [Solanum lycopersicum] gb|AFD98848.1| retinobla659008598 (4)emb|CDP18998.1|2e-70unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS007G05+ GATGTCTCATAAATTNTGCAAAGTGATGCAACC
                      ____________________________________________________________
consensus GATGTCTCATAAATTNTGCAAAGTGATGCAACC
 
. : . : . : . : . : . :
JMFS007G05+ AGGTCTACTTTGTCTCCATTCATAACAAAGCGTGTAGTTTCATTGAAGTTGAAACGTCTA
                      ____________________________________________________________
consensus AGGTCTACTTTGTCTCCATTCATAACAAAGCGTGTAGTTTCATTGAAGTTGAAACGTCTA
 
. : . : . : . : . : . :
JMFS007G05+ AAATGAACAGGAACATGAATTATCAAGATAGCCAACACTGAAAGTAAACCGTTTGTGCAA
                      ____________________________________________________________
consensus AAATGAACAGGAACATGAATTATCAAGATAGCCAACACTGAAAGTAAACCGTTTGTGCAA
 
. : . : . : . : . : . :
JMFS007G05+ GTCACAAGGTCCTTATAGTGGCCATACACATGAACGCGAAGTGAAAGAAATAGCAACCAT
JMSF037F23+ GAAAGAAATAGCAACCAT
                      ____________________________________________________________
consensus GTCACAAGGTCCTTATAGTGGCCATACACATGAACGCGAAGTGAAAGAAATAGCAACCAT
 
. : . : . : . : . : . :
JMFS007G05+ CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
JMSF037F23+ CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
                      ____________________________________________________________
consensus CCAAATCGATGATAGTCTGAAATGCGGCCAGTAGAATTAGCACTTGTTGGGTTGTTGTTT
 
. : . : . : . : . : . :
JMFS007G05+ CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
JMSF037F23+ CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
JMFS021D03+ TAATACTTGCTCAAA
JMSF034N05+ AAATGCACGTTTGTAATACTTGCTCAAA
                      ____________________________________________________________
consensus CCATTGGCATCACTTGTCAAGAAAAACTCTTGAAATGCACGTTTGTAATACTTGCTCAAA
 
. : . : . : . : . : . :
JMFS007G05+ TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
JMSF037F23+ TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
JMFS021D03+ TGGCTCAAGTGCATAAAGTTGTCNTGTAATTCCTNTGCCTCAAGTCTTTTCTCCCAATCT
JMSF034N05+ TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
                      ____________________________________________________________
consensus TGGCTCAAGTGCATAAAGTTTGTCTGTAATTCCTTTGCCTCAAGTCTTTTCTCCCAATCT
 
. : . : . : . : . : . :
JMFS007G05+ GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMSF037F23+ GCACCATAAAGGCTGCTTAGAATCGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMFS021D03+ GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMFS122A12+ CTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
JMSF034N05+ GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
                      ____________________________________________________________
consensus GCACCATAAAGGCTGCTTAGAATTGGACCAACCTTGAGAATGAAATGAGGAAGTTCTTTG
 
. : . : . : . : . : . :
JMFS007G05+ AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMSF037F23+ AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMFS021D03+ AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMFS122A12+ AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
JMSF034N05+ AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
                      ____________________________________________________________
consensus AAAAAGTCTGACATGTTAAGCTTTGCAGACCGTAAAACCTGGCATAAATTAAATCCAAAT
 
. : . : . : . : . : . :
JMFS007G05+ TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMSF037F23+ TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMFS021D03+ TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMFS122A12+ TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
JMSF034N05+ TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
                      ____________________________________________________________
consensus TCATCAGTATTGTGGTTTGAATTATCTGCTTCCTTCCCATTCAACTTTTTGACAGAGAAT
 
. : . : . : . : . : . :
JMFS007G05+ AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGC
JMSF037F23+ AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMFS021D03+ AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMFS122A12+ AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
JMSF034N05+ AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
                      ____________________________________________________________
consensus AGAACAAAAGCAAACCAATACCGTTCCGCATCCTCGGGCGTGCCGATTCCTATAGCAGAA
 
. : . : . : . : . : . :
JMSF037F23+ GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMFS021D03+ GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMFS122A12+ GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
JMSF034N05+ GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
                      ____________________________________________________________
consensus GCATTTTTCAGTAAAATATTTTTGCTGTCACTAAAAAGTTTGGTTGCTTGAACCAAAGCG
 
. : . : . : . : . : . :
JMSF037F23+ CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMFS021D03+ CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMFS122A12+ CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
JMSF034N05+ CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
                      ____________________________________________________________
consensus CCCCCGTCCATACGCAATTCATTCTTGCAGAAATCAGTGAATCGAACTTCCAAAGGGTCT
 
. : . : . : . : . : . :
JMSF037F23+ GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMFS021D03+ GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMFS122A12+ GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMSF034N05+ GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
JMSF007A08+ CGCTAGGTTGCTCCATT
                      ____________________________________________________________
consensus GCACCTCCCATGCAGGTTCCATCTCCAGAATGACCGCAAGGCTCGCTAGGTTGCTCCATT
 
. : . : . : . : . : . :
JMSF037F23+ TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMFS021D03+ TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMFS122A12+ TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMSF034N05+ TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
JMSF007A08+ TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
                      ____________________________________________________________
consensus TATACTCCAAACAGCTAGTAGATCGAGACAAGAAGAGAAAACCCTAGCTCTTTAACAACC
 
. : . : . : . : . : . :
JMSF037F23+ AT
JMFS021D03+ ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMFS122A12+ ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMSF034N05+ ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
JMSF007A08+ ATGAGAGGAAGAATTAGATCGAATTCGCATCATAGGCGCGCTCAATTTAGTCCCACCCTG
                      ____________________________________________________________
consensus ATGAGAGGAAGAATTAGATCGAATTCGCATTATAGGCGCGCTCAATTTAGTCCCACCCTG
 
. : . : . : . : . : . :
JMFS021D03+ AGATTGCTGTGTT
JMFS122A12+ AGATTGCTGTGTT
JMSF034N05+ AGATTGCTGTGTTTTCTCTCTACTGT
JMSF007A08+ AGATTGCTGTGTTTTCTCTCTACTGTTCTGATCTCCCGAATTCTTACTCTTTCCTAATTG
                      ____________________________________________________________
consensus AGATTGCTGTGTTTTCTCTCTACTGTTCTGATCTCCCGAATTCTTACTCTTTCCTAATTG
 
. : . : . : . : . : . :
JMSF007A08+ CACTTTTTTCTTTTTCTTTTTTCCTAATCTTACTCTTTCCTAATTGCACTTCACCCCCAC
                      ____________________________________________________________
consensus CACTTTTTTCTTTTTCTTTTTTCCTAATCTTACTCTTTCCTAATTGCACTTCACCCCCAC