Contig 007753:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005N04Sequence368007753 (2)420007028 (2)ref|NP_001234006.1|2e-05importin subunit alpha [Solanum lycopersicum] sp|O22478.2|IMA_SOLLC RecName: Ful
JMSF008C20Sequence368007753 (2)757008445 (2)emb|CDP13869.1|8e-112unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+                                                               TGTGCACA
JMSF005N04+                                                              ATGTGCACA
                      ____________________________________________________________
consensus                                                                ATGTGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           GACATACTAGCTCCAACGCAACATTCCCGGCAGTGAAATAGACAACGGATTCGGGTTCCC
JMSF005N04+           GACATACTAGCTCCAACGCAACATTCCCGGCAGTGAAATAGACAACGGATTCGGGTTCCC
                      ____________________________________________________________
consensus             GACATACTAGCTCCAACGCAACATTCCCGGCAGTGAAATAGACAACGGATTCGGGTTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           AATGTTAATTTCCCAGCGTTTTAAACCCTAAATCCTAAGACCCGGATACCAAAAATTAGG
JMSF005N04+           AATGTTAATTTCCCAGCGTTTTAAACCCTAAATCCTAAGACCCGGATACCAAAAATTAGG
                      ____________________________________________________________
consensus             AATGTTAATTTCCCAGCGTTTTAAACCCTAAATCCTAAGACCCGGATACCAAAAATTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           GATTTTCTAGCCCGGGTTTCAGCTGGAAGAAAAAACAACACAGAAGATTGATAAGATGAG
JMSF005N04+           GATTTTCTAGCCCGGGTTTCAGCTGGAAGAAAAAACAACACAGAAGATTGATAAGATGAG
                      ____________________________________________________________
consensus             GATTTTCTAGCCCGGGTTTCAGCTGGAAGAAAAAACAACACAGAAGATTGATAAGATGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           AAGGCTCCCCGTATATGCTCGAACTGTGTGAATTTTCTCTCTCTATATGTATATATGCAT
JMSF005N04+           AAGGCTCCCCGTATATGCTCGAACTGTGTGAATTTTCTCTCTCTATATGTATATATGCAT
                      ____________________________________________________________
consensus             AAGGCTCCCCGTATATGCTCGAACTGTGTGAATTTTCTCTCTCTATATGTATATATGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           GCAAAATCTCTCACTGAACACCAATCGGAAATTGAAGATGGGTCCGGGAGGATGACGGAC
JMSF005N04+           GCAAAATCTCTCACTGAACACCAATCGGAAATTGAAGATGGGTCCGGGAGGATGACGGAC
                      ____________________________________________________________
consensus             GCAAAATCTCTCACTGAACACCAATCGGAAATTGAAGATGGGTCCGGGAGGATGACGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008C20+           GGGGGAACATCGGGGAACGGGTCGGATGTAAAACCAGTGGGACGTCCGATTTGATTTCCC
JMSF005N04+           GGGGGAACATCGGGGAACGGGTCGGATGTAAAA-CAGTGGGACGTCCGATTTGATTTCCC
                      ____________________________________________________________
consensus             GGGGGAACATCGGGGAACGGGTCGGATGTAAAACCAGTGGGACGTCCGATTTGATTTCCC