Contig 007718:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005I22Sequence479007718 (4)ref|XP_009795287.1|5e-71PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Nicotiana sylvestris]758023306gb|ABK92718.1|2e-35unknown [Populus trichocarpa]
JMFS109H10Sequence617007718 (4)ref|XP_009603884.1|1e-117PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X4 [Nicotiana tomen
JMFS162B05Sequence574007718 (4)ref|XP_009795287.1|9e-86PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Nicotiana sylvestris]
JMSF017P06Sequence498007718 (4)ref|XP_009795287.1|2e-71PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS109H10+              GAGTCATATGACCAATAATCAATGACCTTCCTTACAGCAACATCAGCTTCAATTACA
                      ____________________________________________________________
consensus                GAGTCATATGACCAATAATCAATGACCTTCCTTACAGCAACATCAGCTTCAATTACA
 
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JMFS109H10+           ACAGTATCGCTCACAAGGTATCCCTTGCCAGGGTCATAAAGCTCACTAAGAAGCATGAAC
                      ____________________________________________________________
consensus             ACAGTATCGCTCACAAGGTATCCCTTGCCAGGGTCATAAAGCTCACTAAGAAGCATGAAC
 
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JMFS109H10+           GATGTAAAACCCCAATCACTTTCCCTTTGGTTGAATTGGTGTTGCGTCTCCTTTTTAACA
JMFS162B05+                                     TTGGTTGAATTGGTGTTGCGTCTCCTTTTTAACA
                      ____________________________________________________________
consensus             GATGTAAAACCCCAATCACTTTCCCTTTGGTTGAATTGGTGTTGCGTCTCCTTTTTAACA
 
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JMFS109H10+           GTATACTTGGGATTAATTTGATTCACAACAGCTAAGCTGAACTGGGCATATCTATTCCAC
JMSF017P06+                                    CAACAGNTAAGCTGAACTGGGCATATCTATTCCAC
JMFF005I22+                                    CAACAGNTAAGCTGAACTGGGCATATCTATTCCAC
JMFS162B05+           GTATACTTGGGATTAATTTGATTCACAACAGCTAAGCTGAACTGGGCATATCTATTCCAC
                      ____________________________________________________________
consensus             GTATACTTGGGATTAATTTGATTCACAACAGCTAAGCTGAACTGGGCATATCTATTCCAC
 
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JMFS109H10+           CCATATGGTAAAGTAGCTGAATCTGCCACATCCAAATACATTGACAAGCATTCCACATTG
JMSF017P06+           CCATATGGTAAAGTAGCTGAATCTGCCACATCCAAATACATTGACAAGCATTCCACATTG
JMFF005I22+           CCATATGGTAAAGTAGCTGAATCTGCCACATCCAAATACATTGACAAGCATTCCACATTG
JMFS162B05+           CCATATGGTAAAGTAGCTGAATCTGCCACATCCAAATACATTGACAAGCATTCCACATTG
                      ____________________________________________________________
consensus             CCATATGGTAAAGTAGCTGAATCTGCCACATCCAAATACATTGACAAGCATTCCACATTG
 
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JMFS109H10+           TTTCCTTTTGGAAATATTAGCACCCGCCATTTATAACCACCTACAGTAAAAACCTCTGAG
JMSF017P06+           TTTCCTTTTGGAAATATTAGCACCCGCCATTTATAACCACCTACAGTAAAAACCTCTGAG
JMFF005I22+           TTTCCTTTTGGAAATATTAGCACCCGCCATTTATAACCACCTACAGTAAAAACCTCTGAG
JMFS162B05+           TTTCCTTTTGGAAATATTAGCACCCGCCATTTATAACCACCTACAGTAAAAACCTCTGAG
                      ____________________________________________________________
consensus             TTTCCTTTTGGAAATATTAGCACCCGCCATTTATAACCACCTACAGTAAAAACCTCTGAG
 
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JMFS109H10+           TATAGCTTCTTCACATTTAACCTAGAAAAATTTTCAATTGTCCATGTGAAGCGAGAAGCC
JMSF017P06+           TATAGCTTCTTCACATTTAACCTAGAAAAATTTTCAATTGTCCATGTGAAGCGAGAAGCC
JMFF005I22+           TATAGCTTCTTCACATTTAACCTAGAAAAATTTTCAATTGTCCATGTGAAGCGAGAAGCC
JMFS162B05+           TATAGCTTCTTCACATTTAACCTAGAAAAATTTTCAATTGTCCATGTGAAGCGAGAAGCC
                      ____________________________________________________________
consensus             TATAGCTTCTTCACATTTAACCTAGAAAAATTTTCAATTGTCCATGTGAAGCGAGAAGCC
 
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JMFS109H10+           TGTGGCTCATCTACTGCTTGGTTTTCCACCGCATTAGCACTCTCTGTTGGTGTAACTTCC
JMSF017P06+           TGTGGCTCATCTACTGCTTGGTTTTCCACCGCATTAGCACTCTCTGTTGGTGTAACTTCC
JMFF005I22+           TGTGGCTCATCTACTGCTTGGTTTTCCACCGCATTAGCACTCTCTGTTGGTGTAACTTCC
JMFS162B05+           TGTGGCTCATCTACTGCTTGGTTTTCCACCGCATTAGCACTCTCTGTTGGTGTAACTTCC
                      ____________________________________________________________
consensus             TGTGGCTCATCTACTGCTTGGTTTTCCACCGCATTAGCACTCTCTGTTGGTGTAACTTCC
 
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JMFS109H10+           ATGGGCTGAGGACCTTCCACTAGTGGCTGAGGACCCTCCACTACATCAGAGTGCGGCACA
JMSF017P06+           ATGGGCTGAGGACCTTCCACTAGTGGCTGAGGACCCTCCACTACATCAGAGTGCGGCACA
JMFF005I22+           ATGGGCTGAGGACCTTCCACTAGTGGCTGAGGACCCTCCACTACATCAGAGTGCGGCACA
JMFS162B05+           ATGGGCTGAGGACCTTCCACTAGTGGCTGAGGACCCTCCACTACATCAGAGTGCGGCACA
                      ____________________________________________________________
consensus             ATGGGCTGAGGACCTTCCACTAGTGGCTGAGGACCCTCCACTACATCAGAGTGCGGCACA
 
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JMFS109H10+           AGCATCTCCTCTTCCTGCTGATCCAACGGTTGATGATTCAGCATGGTCATAACGGAAGAG
JMSF017P06+           AGCATCTCCTCTTCCTGCTGATCCAACGGTTGATGATTCAGCATGGTCATAACGGAAGAG
JMFF005I22+           AGCATCTCCTCTTCCTGCTGATCCAACGGTTGATGATTCAGCATGGTCATAACGGAAGAG
JMFS162B05+           AGCATCTCCTCTTCCTGCTGATCCAACGGTTGATGATTCAGCATGGTCATAACGGAAGAG
                      ____________________________________________________________
consensus             AGCATCTCCTCTTCCTGCTGATCCAACGGTTGATGATTCAGCATGGTCATAACGGAAGAG
 
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JMFS109H10+           AAATTGAGGGTCCGATCAAC                                        
JMSF017P06+           AAATTGAGGGTCCGATCAACAATTGAAAGGGATAGCAAGAGGAGGCTCTCCGGTGAAGAG
JMFF005I22+           AAATTGAGGGTCCGATCAACAATTGAAAGGGATAGCAAGAGGAGGCTCTCCGGTGAAGAG
JMFS162B05+           AAATTGAGGGTCCGATCAACAATTGAAAGGGATAGCAAGAGGAGGCTCTCCGGTGAAGAG
                      ____________________________________________________________
consensus             AAATTGAGGGTCCGATCAACAATTGAAAGGGATAGCAAGAGGAGGCTCTCCGGTGAAGAG
 
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JMSF017P06+           AGAAGCGAGTTGAGGTGGAGAGAGAGAAAGAAGACTCT                      
JMFF005I22+           AGAAGCGAGTTGAGGT                                            
JMFS162B05+           AGAAGCGAGTTGAGGTGGAGAGAGAGAAAGAAGACTCTGGGTTTCTGAGTGTGTCGATGG
                      ____________________________________________________________
consensus             AGAAGCGAGTTGAGGTGGAGAGAGAGAAAGAAGACTCTGGGTTTCTGAGTGTGTCGATGG