clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS030E10 | Sequence | 539 | 007717 (5) | ref|XP_009766132.1| | 3e-57 | PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Nicotiana sy | |||||
JMFS094B10 | Sequence | 622 | 007717 (5) | ref|XP_009610431.1| | 5e-112 | PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Nicotiana to | |||||
JMFS127A01 | Sequence | 619 | 007717 (5) | ref|XP_009766132.1| | 3e-81 | PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Nicotiana sy | |||||
JMFS144D08 | Sequence | 577 | 007717 (5) | ref|XP_009610431.1| | 2e-108 | PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Nicotiana to | |||||
JMFS161E08 | Sequence | 611 | 007717 (5) | ref|XP_009766132.1| | 2e-58 | PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Nicotiana sy |
This contig is upended
. : . : . : . : . : . :
JMFS094B10+ TCTGAAATCCTA
____________________________________________________________
consensus TCTGAAATCCTA
. : . : . : . : . : . :
JMFS094B10+ TCAACCGAGTCACCAGCACTTTTTAGTCCAGATTGTACTTTACCATCCACATTTGGACTG
____________________________________________________________
consensus TCAACCGAGTCACCAGCACTTTTTAGTCCAGATTGTACTTTACCATCCACATTTGGACTG
. : . : . : . : . : . :
JMFS094B10+ CTTTCTTCCAACTTTTCATCTGTCCTTGCACCAAGTAACTTCCGCATTCCAAGTGCAAAT
JMFS144D08+ TCCTTGCACCAAGTAACTTCCGCATTCCAAGTGCAAAT
____________________________________________________________
consensus CTTTCTTCCAACTTTTCATCTGTCCTTGCACCAAGTAACTTCCGCATTCCAAGTGCAAAT
. : . : . : . : . : . :
JMFS094B10+ GCACGAGCATTAGAGAGCCTTTGGATATCAGCCACTAATTTACGGATACTATCAGCCTCA
JMFS144D08+ GCACGAGCATTAGAGAGCCTTTGGATATCAGCCACTAATTTACGGATACTATCAGCCTCA
____________________________________________________________
consensus GCACGAGCATTAGAGAGCCTTTGGATATCAGCCACTAATTTACGGATACTATCAGCCTCA
. : . : . : . : . : . :
JMFS094B10+ ACAGAATGGTAGCTCAAAACAACACCCTCTGAATCATAACGGATATGAGAATCTGCATCA
JMFS144D08+ ACAGAATGGTAGCTCAAAACAACACCCTCTGAATCATAACGGATATGAGAATCTGCATCA
____________________________________________________________
consensus ACAGAATGGTAGCTCAAAACAACACCCTCTGAATCATAACGGATATGAGAATCTGCATCA
. : . : . : . : . : . :
JMFS094B10+ GATGTATTTGCAATTCGAACACCAGAACCCCATGGAGTACTACTGCCACCTTTTTGAAGC
JMFS144D08+ GATGTATTTGCAATTCGAACACCAGAACCCCATGGAGTACTACTGCCACCTTTTTGAAGC
____________________________________________________________
consensus GATGTATTTGCAATTCGAACACCAGAACCCCATGGAGTACTACTGCCACCTTTTTGAAGC
. : . : . : . : . : . :
JMFS094B10+ TCCCACAGGTCCTGAAAGTGTTGGTCAATGATTTTGACATCCCAATACATGCTTCCAGGC
JMFS144D08+ TCCCACAGGTCCTGAAAGTGTTGGTCAATGATTTTGACATCCCAATACATGCTTCCAGGC
____________________________________________________________
consensus TCCCACAGGTCCTGAAAGTGTTGGTCAATGATTTTGACATCCCAATACATGCTTCCAGGC
. : . : . : . : . : . :
JMFS094B10+ CTCCCAAGCCGCAAGCATATATGTTGCCATGTGTCATCTCTAGCAAAAGGAAGTCGGAAC
JMFS144D08+ CTCCCAAGCCGCAAGCATATATGTTGCCATGTGTCATCTCTAGCAAAAGGAAGTCGGAAC
JMFS127A01+ ATGTGTCATCTCTAGCAAAAGGAAGTCGGAAC
____________________________________________________________
consensus CTCCCAAGCCGCAAGCATATATGTTGCCATGTGTCATCTCTAGCAAAAGGAAGTCGGAAC
. : . : . : . : . : . :
JMFS094B10+ CACAGTTTTGAGGATGCACTTCTAAGACCCACCTCTTCAACATACGGGATTTCAAGTGCA
JMFS144D08+ CACAGTTTTGAGGATGCACTTCTAAGACCCACCTCTTCAACATACGGGATTTCAAGTGCA
JMFS127A01+ CACAGTTTTGAGGATGCACTTCTAAGACCCACCTCTTCAACATACGGGATTTCAAGTGCA
____________________________________________________________
consensus CACAGTTTTGAGGATGCACTTCTAAGACCCACCTCTTCAACATACGGGATTTCAAGTGCA
. : . : . : . : . : . :
JMFS094B10+ TCCATCTGACTAGTAAGTCGGGCATGCTTGATACAAAGTGAGCAATGCCTGATAACGTGA
JMFS144D08+ TCCATCTGACTAGTAAGTCGGGCATGCTTGATACAAAGTGAGCAATGCCTGATAACGTGA
JMFS127A01+ TCCATCTGACTAGTAAGTCGGGCATGCTTGATACAAAGTGAGCAATGCCTGATAACGTGA
____________________________________________________________
consensus TCCATCTGACTAGTAAGTCGGGCATGCTTGATACAAAGTGAGCAATGCCTGATAACGTGA
. : . : . : . : . : . :
JMFS094B10+ AGAAGGGCAGAAACATATACAGTAGAAGGTGCATTGCCTTTATGAGTTTCATTTAAGAGA
JMFS144D08+ AGAAGGGCAGAAACATATACAGTAGAAGGTGCATTGCCTTTATGAGTTTCATTTAAGAGA
JMFS127A01+ AGAAGGGCAGAAACATATACAGTAGAAGGTGCATTGCCTTTATGAGTTTCATTTAAGAGA
____________________________________________________________
consensus AGAAGGGCAGAAACATATACAGTAGAAGGTGCATTGCCTTTATGAGTTTCATTTAAGAGA
. : . : . : . : . : . :
JMFS094B10+ TCAGCATAAC
JMFS144D08+ TCAGCATAACTGTAGCCATCAGTTTTACCAGATATCTCCAAAGAAACTAGCATTTGTGA
JMFS127A01+ TCAGCATAACTGTAGCCATCAGTTTTACCAGATATCTCCAAAGAAACTAGCATTTGTGAC
JMFS030E10+ ACTGTAGCCATCAGTTTTACCAGATATCTCCAAAGAAACTAGCATTTGTGAC
____________________________________________________________
consensus TCAGCATAACTGTAGCCATCAGTTTTACCAGATATCTCCAAAGAAACTAGCATTTGTGAC
. : . : . : . : . : . :
JMFS127A01+ TGAAGATGATGAGTGCTAGCAGACTCCACAACCTTTCTTCTCTTGTAAGATCCTTCACTG
JMFS030E10+ TGAAGATGATGAGTGCTAGCAGACTCCACAACCTTTCTTCTCTTGTAAGATCCTTCACTG
____________________________________________________________
consensus TGAAGATGATGAGTGCTAGCAGACTCCACAACCTTTCTTCTCTTGTAAGATCCTTCACTG
. : . : . : . : . : . :
JMFS127A01+ GATTCTTTTCCTTGAAGTGATGGAAGTGAATTTAATAAATCTGAAACTGTACGCTTTCTA
JMFS030E10+ GATTCTTTTCCTTGAAGTGATGGAAGTGAATTTAATAAATCTGAAACTGTACGCTTTCTA
JMFS161E08+ TACGCTTTCTA
____________________________________________________________
consensus GATTCTTTTCCTTGAAGTGATGGAAGTGAATTTAATAAATCTGAAACTGTACGCTTTCTA
. : . : . : . : . : . :
JMFS127A01+ GGCATTTTATTTTGTCTAGAAGCTGCATCATGACTTGAATTTGCACATGTAGCAGAAGTG
JMFS030E10+ GGCATTTTATTTTGTCTAGAAGCTGCATCATGACTTGAATTTGCACATGTAGCAGAAGTG
JMFS161E08+ GGCATTTTATTTTGTCTAGAAGCTGCATCATGACTTGAATTTGCACATGTAGCAGAAGTG
____________________________________________________________
consensus GGCATTTTATTTTGTCTAGAAGCTGCATCATGACTTGAATTTGCACATGTAGCAGAAGTG
. : . : . : . : . : . :
JMFS127A01+ ACTTGGGATAGGGGACTTGTAACTAATGAGTTAGATCCAGAAGCCCTAAGGCTTGCAGAT
JMFS030E10+ ACTTGGGATAGGGGACTTGTAACTAATGAGTTAGATCCAGAAGCCCTAAGGCTTGCAGAT
JMFS161E08+ ACTTGGGATAGGGGACTTGTAACTAATGAGTTAGATCCAGAAGCCCTAAGGCTTGCAGAT
____________________________________________________________
consensus ACTTGGGATAGGGGACTTGTAACTAATGAGTTAGATCCAGAAGCCCTAAGGCTTGCAGAT
. : . : . : . : . : . :
JMFS127A01+ ACTGTGCCCCCTGGAGAGCTCTTTGGGGCATTAGATGTTCCAATTGATGCAGGAGTTGGA
JMFS030E10+ ACTGTGCCCCCTGGAGAGCTCTTTGGGGCATTAGATGTTCCAATTGATGCAGGAGTTGGA
JMFS161E08+ ACTGTGCCCCCTGGAGAGCTCTTTGGGGCATTAGATGTTCCAATTGATGCAGGAGTTGGA
____________________________________________________________
consensus ACTGTGCCCCCTGGAGAGCTCTTTGGGGCATTAGATGTTCCAATTGATGCAGGAGTTGGA
. : . : . : . : . : . :
JMFS127A01+ AGGCTATTTCGGTTTGGTGGAGATAGAAGTTGAGCTGACCGAGGCAG
JMFS030E10+ AGGCTATTTCGGTTTGGTGGAGATAGAAGTTGAGCTGACCGAGGCAGCTGATCTTCATCC
JMFS161E08+ AGGCTATTTCGGTTTGGTGGAGATAGAAGTTGAGCTGACCGAGGCAGCTGATCTTCATCC
____________________________________________________________
consensus AGGCTATTTCGGTTTGGTGGAGATAGAAGTTGAGCTGACCGAGGCAGCTGATCTTCATCC
. : . : . : . : . : . :
JMFS030E10+ ATTGATGTGTAAGATTCAATTCCAACAGAATGTGGTGACCTTAGAGACACCAAATCTTGC
JMFS161E08+ ATTGATGTGTAAGATTCAATTCCAACAGAATGTGGTGACCTTAGAGACACCAAATCTTGC
____________________________________________________________
consensus ATTGATGTGTAAGATTCAATTCCAACAGAATGTGGTGACCTTAGAGACACCAAATCTTGC
. : . : . : . : . : . :
JMFS030E10+ TCAGACCTGGAAGCTGTCAATTTCTTCATAGTTTGACTTCTTCCAGGAAATGGGGATAAC
JMFS161E08+ TCAGACCTGGAAGCTGTCAATTTCTTCATAGTTTGACTTCTTCCAGGAAATGGGGATAAC
____________________________________________________________
consensus TCAGACCTGGAAGCTGTCAATTTCTTCATAGTTTGACTTCTTCCAGGAAATGGGGATAAC
. : . : . : . : . : . :
JMFS030E10+ GAACTGG
JMFS161E08+ GAACTGGTGGATCCCGACTGTACTATCCCCTTGTAAATTGAAACATTATTTTGCAATATC
____________________________________________________________
consensus GAACTGGTGGATCCCGACTGTACTATCCCCTTGTAAATTGAAACATTATTTTGCAATATC
. : . : . : . : . : . :
JMFS161E08+ TGCACTCCCCCTTCCCATTTAGGAGATGATGTTCCAACTTTTGAACTATGCAAATTTGTA
____________________________________________________________
consensus TGCACTCCCCCTTCCCATTTAGGAGATGATGTTCCAACTTTTGAACTATGCAAATTTGTA
. : . : . : . : . : . :
JMFS161E08+ GACCCCGGAACAAAATGTGAAGCAGGAGAACTGGCAAATCTATAAGGGGGATTTGCACCA
____________________________________________________________
consensus GACCCCGGAACAAAATGTGAAGCAGGAGAACTGGCAAATCTATAAGGGGGATTTGCACCA
. : . : . : . : . : . :
JMFS161E08+ GTCGTAGAAGGAAGAGCTTTCTCTAGTTCAAACACTTCATCAACAATGGATGAGAAATTA
____________________________________________________________
consensus GTCGTAGAAGGAAGAGCTTTCTCTAGTTCAAACACTTCATCAACAATGGATGAGAAATTA