Contig 007696:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS116G02Sequence566007696 (4)dbj|BAG31377.1|7e-08topoisomerase I [Catharanthus roseus]
JMFS122E04Sequence571007696 (4)dbj|BAG31377.1|8e-08topoisomerase I [Catharanthus roseus]
JMFS136F02Sequence621007696 (4)dbj|BAG31377.1|3e-06topoisomerase I [Catharanthus roseus]
JMSF010J12Sequence298007696 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS122E04+ GCTTATCATCTTCAGAGTC
                      ____________________________________________________________
consensus GCTTATCATCTTCAGAGTC
 
. : . : . : . : . : . :
JMFS122E04+ TGATTCGCCATTTGGATCTGAAACAGATGGCTTCTCCTCCATAACAACCGTGTTTGATCT
JMFS116G02+ TGATTCGCCATTTGGATCTGAAACAGATGGCTTCTCCTCCATAACAACCGTGTTTGATCT
JMFS136F02+ CATAACAACCGTGTTTGATCT
                      ____________________________________________________________
consensus TGATTCGCCATTTGGATCTGAAACAGATGGCTTCTCCTCCATAACAACCGTGTTTGATCT
 
. : . : . : . : . : . :
JMFS122E04+ GCATTGGTTTAAATTAGTTGACCGATTAGCTGGAGAAGCTAACGGTTTTGAGTTTTTAAC
JMFS116G02+ GCATTGGTTTAAATTAGTTGACCGATTAGCTGGAGAAGCTAACGGTTTTGAGTTTTTAAC
JMFS136F02+ GCATTGGTTTAAATTAGTTGACCGATTAGCTGGAGAAGCTAACGGTTTTGAGTTTTTAAC
                      ____________________________________________________________
consensus GCATTGGTTTAAATTAGTTGACCGATTAGCTGGAGAAGCTAACGGTTTTGAGTTTTTAAC
 
. : . : . : . : . : . :
JMFS122E04+ AACAGTATTTGCTGGTGATGTCTTGCTTGTTGGAGGTGACAGTCTTGGGCTAACCAATGG
JMFS116G02+ AACAGTATTTGCTGGTGATGTCTTGCTTGTTGGAGGTGACAGTCTTGGGCTAACCAATGG
JMFS136F02+ AACAGTATTTGCTGGTGATGTCTTGCTTGTTGGAGGTGACAGTCTTGGGCTAACCAATGG
                      ____________________________________________________________
consensus AACAGTATTTGCTGGTGATGTCTTGCTTGTTGGAGGTGACAGTCTTGGGCTAACCAATGG
 
. : . : . : . : . : . :
JMFS122E04+ TGATTTCACTGGTGATGCCTTGGAGGAGGGGACTGTTTTGTTGTCCTTTTGAACAGTAGA
JMFS116G02+ TGATTTCACTGGTGATGCCTTGGAGGAGGGGACTGTTTTGTTGTCCTTTTGAACAGTAGA
JMFS136F02+ TGATTTCACTGGTGATGCCTTGGAGGAGGGGACTGTTTTGTTGTCCTTTTGAACAGTAGA
                      ____________________________________________________________
consensus TGATTTCACTGGTGATGCCTTGGAGGAGGGGACTGTTTTGTTGTCCTTTTGAACAGTAGA
 
. : . : . : . : . : . :
JMFS122E04+ ATTTTGACCATTAAGAGAATTGGTATTGGAGATCTGCCTCCCTACCTGTCCATCATGCTT
JMFS116G02+ ATTTTGACCATTAAGAGAATTGGTATTGGAGATCTGCCTCCCTACCTGTCCATCATGCTT
JMSF010J12+ CTACCTGTCCATCATGCTT
JMFS136F02+ ATTTTGACCATTAAGAGAATTGGTATTGGAGATCTGCCTCCCTACCTGTCCATCATGCTT
                      ____________________________________________________________
consensus ATTTTGACCATTAAGAGAATTGGTATTGGAGATCTGCCTCCCTACCTGTCCATCATGCTT
 
. : . : . : . : . : . :
JMFS122E04+ TTGAGACAATGATGTATTTGGCTCAGAGTTTGATACATTCGACTTTGATGCCATGTTACC
JMFS116G02+ TTGAGACAATGATGTATTTGGCTCAGAGTTTGATACATTCGACTTTGATGCCATGTTACC
JMSF010J12+ TTGAGACAATGATGTATTTGGCTCAGAGTTTGATACATTCGACTTTGATGCCATGTTACC
JMFS136F02+ TTGAGACAATGATGTATTTGGCTCAGAGTTTGATACATTCGACTTTGATGCCATGTTACC
                      ____________________________________________________________
consensus TTGAGACAATGATGTATTTGGCTCAGAGTTTGATACATTCGACTTTGATGCCATGTTACC
 
. : . : . : . : . : . :
JMFS122E04+ ACGCTTGAAACGTAAGGGCATCTCATCATCATCATCCATGTCAGTGAAATTAGGTTGCAC
JMFS116G02+ ACGCTTGAAACGTAAGGGCATCTCATCATCATCATCCATGTCAGTGAAATTAGGTTGCAC
JMSF010J12+ ACGCTTGAAACGTAAGGGCATCTCATCATCATCATCCATGTCAGTGAAATTAGGTTGCAC
JMFS136F02+ ACGCTTGAAACGTAAGGGCATCTCATCATCATCATCCATGTCAGTGAAATTAGGTTGCAC
                      ____________________________________________________________
consensus ACGCTTGAAACGTAAGGGCATCTCATCATCATCATCCATGTCAGTGAAATTAGGTTGCAC
 
. : . : . : . : . : . :
JMFS122E04+ AGAAGCTGTCATAAACTTCACCAAATTCAATTAATAGTTCAGATTTCTTCAAATTGAAGA
JMFS116G02+ AGAAGCTGTCATAAACTTCACCAAATTCAATTAATAGTTCAGATTTCTTCAAATTGAAGA
JMSF010J12+ AGAAGCTGTCATAAACTTCACCAAATTCAATTAATAGTTCAGATTTCTTCAAATTGAAGA
JMFS136F02+ AGAAGCTGTCATAAACTTCACCAAATTCAATTAATAGTTCAGATTTCTTCAAATTGAAGA
                      ____________________________________________________________
consensus AGAAGCTGTCATAAACTTCACCAAATTCAATTAATAGTTCAGATTTCTTCAAATTGAAGA
 
. : . : . : . : . : . :
JMFS122E04+ GCCGAATATAGGAATTAGCCGATCGCCGCCGTCGTCGGAAGTTGTAAGAGGGAGGCGATT
JMFS116G02+ GCCGAATATAGGAATTAGCCGATCGCCGCCGTCGTCGGAAGTTGTAAGAGGGAGGCGATT
JMSF010J12+ GCCGAATATAGGAATTAGCCGATCGCCGCCGTCGTCGGAAGTTGTAAGAGGGAGGCGATT
JMFS136F02+ GCCGAATATAGGAATTAGCCGATCGCCGCCGTCGTCGGAAGTTGTAAGAGGGAGGCGATT
                      ____________________________________________________________
consensus GCCGAATATAGGAATTAGCCGATCGCCGCCGTCGTCGGAAGTTGTAAGAGGGAGGCGATT
 
. : . : . : . : . : . :
JMFS122E04+ GAGCTGGGACGG
JMFS116G02+ GAGCTGGGACGGGAGATAGGCGTTTT
JMSF010J12+ GAGCTGGGACGGGAGATAGGCGTTTTTTGGAGTTAGAT
JMFS136F02+ GAGCTGGGACGGGAGATAGGCGTTTTTTGGAGTTAGATGAGATGAGGTGAGAGGGTCGGA
                      ____________________________________________________________
consensus GAGCTGGGACGGGAGATAGGCGTTTTTTGGAGTTAGATGAGATGAGGTGAGAGGGTCGGA
 
. : . : . : . : . : . :
JMFS136F02+ GCAATTTTATTCCCTCACAAACGAAACAGATTTTCTTTTGGATTCGGACTCGGGTTCAAA
                      ____________________________________________________________
consensus GCAATTTTATTCCCTCACAAACGAAACAGATTTTCTTTTGGATTCGGACTCGGGTTCAAA