Contig 007684:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-                                    CTGTCCCTATGAGCTTATTCCTATCCAGTCGAAG
JMFF008B13+                                                           ATCCAGTCGAAG
                      ____________________________________________________________
consensus                                       CTGTCCCTATGAGCTTATTCCTATCCAGTCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          CTCTTTGAGGTTTTTCAAATTGCCAAGTTCAGGGGGCAACCTTCCGGTCAACCCATTGGA
JMFF008B13+           CTCTTTGAGGTTTTTCAAATTGCCAAGTTCAGGGGGCAACCTTCCGGTCAACCCATTGGA
                      ____________________________________________________________
consensus             CTCTTTGAGGTTTTTCAAATTGCCAAGTTCAGGGGGCAACCTTCCGGTCAACCCATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          TCGAAGGTTTATTTTCTCGACGTTCTGTAAATCGCCAATCTCCCGAGGAATCGGCCCCGA
JMFF024M12+           TCGAAGGTTTATTTTCTCGACGTTCTGTAAATCGCCAATCTCCCGAGGAATCGGCCCCGA
JMFF008B13+           TCGAAGGTTTATTTTCTCGACGTTCTGTAAATCGCCAATCTCCCGAGGAATCGGCCCCGA
                      ____________________________________________________________
consensus             TCGAAGGTTTATTTTCTCGACGTTCTGTAAATCGCCAATCTCCCGAGGAATCGGCCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          AAACCTGTTATTGCTCAAGTCCAAGACTATAAGGCTTTTTAACAATCCAATTTCCCTCGG
JMFF024M12+           AAACCTGTTATTGCTCAAGTCCAAGACTATAAGGCTTTTTAACAATCCAATTTCCCTCGG
JMFF008B13+           AAACCTGTTATTGCTCAAGTCCAAGACTATAAGGCTTTTTAACAATCCAATTTCCCTCGG
                      ____________________________________________________________
consensus             AAACCTGTTATTGCTCAAGTCCAAGACTATAAGGCTTTTTAACAATCCAATTTCCCTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          TATGGTACCTTGCAGCTGGTTTCCATCCAACATTAGATATTGCAAATTTGGGATTAGATG
JMFF024M12+           TATGGTACCTTGCAGCTGGTTTCCATCCAACATTAGATATTGCAAATTTGGGATTAGATG
JMFF008B13+           TATGCTACCTTGCAGCTGGTTTCCATCCAACATTAGATATTGCAAATTTGGGATTAGATG
                      ____________________________________________________________
consensus             TATGGTACCTTGCAGCTGGTTTCCATCCAACATTAGATATTGCAAATTTGGGATTAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          CAACTCTGGTGCAAGAAAACCCTTTAAAGATGCCCTGGAAATGTTAATGTTGGTAACATG
JMFF024M12+           CAACTCTGGTGCAAGAAAACCCTTTAAAGATGCCCTGGAAATGTTAATGTTGGTAACATG
JMFF008B13+           CAACTCTGGTGCAAGAAAACCCTTTAAAGATGCCCTGGAAATGTTAATGTTGGTAACATG
                      ____________________________________________________________
consensus             CAACTCTGGTGCAAGAAAACCCTTTAAAGATGCCCTGGAAATGTTAATGTTGGTAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          ATCTCCAGCAGCAGAACACAAAATGCCATTCCAATGGCAAGGGTCTGCTGAATCTAGGGC
JMFF024M12+           ATCTCCAGCAGCAGAACACAAAATGCCATTCCAATGGCAAGGGTCTGCTGAATCTAGGGC
JMFF008B13+           ATCTCCAGCAGCAGAACACAAAATGCCATTCCAATGGCAAGGGTCTGCTGAATCTAGGGC
                      ____________________________________________________________
consensus             ATCTCCAGCAGCAGAACACAAAATGCCATTCCAATGGCAAGGGTCTGCTGAATCTAGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP018D11-          ATTCgttgTAcagttAACTAGAAGTGGGTCATCATATATAGC                  
JMFF024M12+           ATTCCAACTAGTCAAAACTAGAAGTGGGTCATCATATATAGCTTCTTTGAACTTAATAAG
JMFF008B13+           ATTCCAACTAGTCAAAACTAGAAGTGGGTCATCATATATAGCTTCTTTGAACTTAATAAG
                      ____________________________________________________________
consensus             ATTCCAACTAGTCAAAACTAGAAGTGGGTCATCATATATAGCTTCTTTGAACTTAATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024M12+           AGCAATCACCTCATTTGAAGGAAGAGCATGGGAAGCCAGAAGAAAGAGTCCACTGGTGAC
JMFF008B13+           AGCAATCACCTCATTTGAAGGAAGAGCATGGGAAGCCAGAAGAAAGAGTCCACTGGTGAC
                      ____________________________________________________________
consensus             AGCAATCACCTCATTTGAAGGAAGAGCATGGGAAGCCAGAAGAAAGAGTCCACTGGTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024M12+           CAAAAGAAGTTGAAGGAAAGTGCGAGCTCTCATCTTTCCCACCTCTCTTGCAA       
JMFF008B13+           CAAAAGAAGTTGAAGGAAAGTGCGAGCTCTCATCTTTCCCACCTCTCTTGCAA       
JMFS127A12+                 AAGTTGAAGGAAAGTGCGAGCTCTCATCTTTCCCACCTCTCTTGCAAGAACAAT
                      ____________________________________________________________
consensus             CAAAAGAAGTTGAAGGAAAGTGCGAGCTCTCATCTTTCCCACCTCTCTTGCAAGAACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           GGTGCCTTTACAGAGATCCAGAACTGAAATAGCCCATCATAACAAGAAACCCACAAAAGA
                      ____________________________________________________________
consensus             GGTGCCTTTACAGAGATCCAGAACTGAAATAGCCCATCATAACAAGAAACCCACAAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           AAGACAGAAAGACCCAGAAGAGAAGAAAAAAGGAAAAAACTAAACAGAGTTGGAGAAATG
                      ____________________________________________________________
consensus             AAGACAGAAAGACCCAGAAGAGAAGAAAAAAGGAAAAAACTAAACAGAGTTGGAGAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           GGTTTATCAAGAAACAGAAGAACAGCCAAGATTTGCAATGGCAGTCTTATCAAGCAAACA
                      ____________________________________________________________
consensus             GGTTTATCAAGAAACAGAAGAACAGCCAAGATTTGCAATGGCAGTCTTATCAAGCAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           GTATTAGAAAAGAAAAAAAAAAAAATCTAAAACACAAAAAAGAAAAGGGGACCCTTTTTC
                      ____________________________________________________________
consensus             GTATTAGAAAAGAAAAAAAAAAAAATCTAAAACACAAAAAAGAAAAGGGGACCCTTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           AATTAAAAGAATTAAAGCAAGGACGCAGAGAGTGAAGTTGAAAGACACCAACTTTGCTAG
                      ____________________________________________________________
consensus             AATTAAAAGAATTAAAGCAAGGACGCAGAGAGTGAAGTTGAAAGACACCAACTTTGCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           TACTGGCAAAACTTGGTTTCGAAGAGAAGTTTAGTGTCAAGTAAAAAAATATTCAAGAAA
                      ____________________________________________________________
consensus             TACTGGCAAAACTTGGTTTCGAAGAGAAGTTTAGTGTCAAGTAAAAAAATATTCAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           GGATAAAATTTCTGATAAAGAAAGAAGTAAAAGAAAATGGGAATTCTTTAATAGCTATAA
                      ____________________________________________________________
consensus             GGATAAAATTTCTGATAAAGAAAGAAGTAAAAGAAAATGGGAATTCTTTAATAGCTATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           AGAGAACTCAAAGCCACCTGCAATTGGATGAATATAGGAAATGGAGTAGCAGAGATTAGT
                      ____________________________________________________________
consensus             AGAGAACTCAAAGCCACCTGCAATTGGATGAATATAGGAAATGGAGTAGCAGAGATTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127A12+           CTAAAAAACATTTAAAAAAAAAAAAAAGAATTAGAGAGAGAGAAGAGAGAGCAACAAGGG
                      ____________________________________________________________
consensus             CTAAAAAACATTTAAAAAAAAAAAAAAGAATTAGAGAGAGAGAAGAGAGAGCAACAAGGG