Contig 007667:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS059E10Sequence616007667 (3)ref|XP_009605434.1|1e-64PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Nicotiana
JMFS110A08Sequence537007667 (3)ref|XP_009605434.1|3e-97PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Nicotiana
JMSF018E17Sequence489003799 (5)ref|XP_009781148.1|2e-71PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]727007667 (3)ref|XP_009605434.1|1e-74PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Nicotiana

Alignment

This contig is upended


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rJMSF018E17-                       ATAATGCAATAATTCAAGTCCTCAACTACCAAGATGGCAAGAACTAG
                      ____________________________________________________________
consensus                          ATAATGCAATAATTCAAGTCCTCAACTACCAAGATGGCAAGAACTAG
 
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JMFS059E10+                        TACAATTNTGCAGACTCCATTCAGAAACCCACTCCCCCTCTCAAACC
rJMSF018E17-          TAGCCAAAACTCTTACAATTTTGCAGACTCCATTCAGAAACCCACTCCCCCTCTCAAACC
                      ____________________________________________________________
consensus             TAGCCAAAACTCTTACAATTTTGCAGACTCCATTCAGAAACCCACTCCCCCTCTCAAACC
 
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JMFS059E10+           TGTCCCTTTCTCTATGTTTTAATCACTTTATACACAACTACTTATAGCCTGCCCTTAATA
rJMSF018E17-          TGTCCCTTTCTCTATGTTTTAATCACTTTATACACAACTACTTATAGCCTGCCCTTAATA
                      ____________________________________________________________
consensus             TGTCCCTTTCTCTATGTTTTAATCACTTTATACACAACTACTTATAGCCTGCCCTTAATA
 
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JMFS059E10+           ACTTTAGTTGCCCCGGGGTTCGGGTACGATTTTCAGTCTTTAACCACTGCTGTTCTGGGA
rJMSF018E17-          ACTTTAGTTGCCCCGGGGTTCGGGTACGATTTTCAGTCTTTAACCACTGCTGTTCTGGGA
                      ____________________________________________________________
consensus             ACTTTAGTTGCCCCGGGGTTCGGGTACGATTTTCAGTCTTTAACCACTGCTGTTCTGGGA
 
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JMFS059E10+           TATCACTTCTCCGAACTTGAGGAACAGTTGGGCGTCCGATGTGCTCATGGATGAGTAGTT
rJMSF018E17-          TATCACTTCTCCGAACTTGAGGAACAGTTGGGCGTCCGATGTGCT-ATGGATGAGTAGTT
                      ____________________________________________________________
consensus             TATCACTTCTCCGAACTTGAGGAACAGTTGGGCGTCCGATGTGCTCATGGATGAGTAGTT
 
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JMFS059E10+           TACGAGATGGGGGGTCTTCAGATTCGCGTACTCGTCCTTGTAGCATGGCGTGTGGGCAGA
rJMSF018E17-          TACGAGATGGGGGGTCTTCAGATTCGCGTACTCGTCCTTGTAGCATGGC--GTGGGCAGA
JMFS110A08+                   GGGGGGTCTTCAGATTCGCGTACTCGTCCTTGTAGCATGGCGTGTGGGCAGA
                      ____________________________________________________________
consensus             TACGAGATGGGGGGTCTTCAGATTCGCGTACTCGTCCTTGTAGCATGGCGTGTGGGCAGA
 
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JMFS059E10+           AGGGAGCGGCG--AGTGTGGTTGGGTTCAGCTGTTTTGGCTCGGTTGACTGTTTTAGGCT
rJMSF018E17-          AGGGAGCGGCGCCAGTGTGGTTGGGTTCAGCTGTTTTGGCTCGGTTGACTGTTTTAGGCT
JMFS110A08+           AGGGAGCGGCGCCAGTGTGGTTGGGTTCAGCTGTTTTGGCTCGGTTGACTGTTTTAGGCT
                      ____________________________________________________________
consensus             AGGGAGCGGCGCCAGTGTGGTTGGGTTCAGCTGTTTTGGCTCGGTTGACTGTTTTAGGCT
 
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JMFS059E10+           CTCGAGCACCCGGACAACCTCGTGCATCGTTGGCCTCTCGAATGGCTGCCTCTTGGTGCA
rJMSF018E17-          CTCGAGCACCCGGACAACCTCGTGCATCGTTGGCCTCTCGAATGGCTGCCTCTTGGTGCA
JMFS110A08+           CTCGAGCACCCGGACAACCTCGTGCATCGTTGGCCTCTCGAATGGCTGCCTCTTGGTGCA
                      ____________________________________________________________
consensus             CTCGAGCACCCGGACAACCTCGTGCATCGTTGGCCTCTCGAATGGCTGCCTCTTGGTGCA
 
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JMFS059E10+           CAGAAGGGCGAGCTGGAAAACCTTCTTCACGTCCCCGAGATCCTTGCACGTAGCAGAGAT
rJMSF018E17-          CAGAAGGGCGAGCTGGAAAACCTTCTTCACGTCCCCGAGATCCTTGCACGTAGCAGAGAT
JMFS110A08+           CAGAAGGGCGAGCTGGAAAACCTTCTTCACGTCCCCGAGATCCTTGCACGTAGCAGAGAT
                      ____________________________________________________________
consensus             CAGAAGGGCGAGCTGGAAAACCTTCTTCACGTCCCCGAGATCCTTGCACGTAGCAGAGAT
 
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JMFS059E10+           TTCGGGGTCAACGGTTTCCATCACTGCGTTGTTTGCAGCCTTCGTTAGGATCAGATGATG
rJMSF018E17-          TTCGGGGTCAACGGTTTCCATCACTGCGTTGTTTGCAGCCTTCGTTAGGATCAGATGATG
JMFS110A08+           TTCGGGGTCAACGGTTTCCATCACTGCGTTGTTTGCAGCCTTCGTTAGGATCAGATGATG
                      ____________________________________________________________
consensus             TTCGGGGTCAACGGTTTCCATCACTGCGTTGTTTGCAGCCTTCGTTAGGATCAGATGATG
 
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JMFS059E10+           AAGGTTGGATTCGTTATCGACAGCTTTCCTTCCCGTCAGCAATTCTAGCAGAACGATCCC
rJMSF018E17-          AAGGTTGGATTCGTTATCGACAGCTTTCCTTCCCGTCAGCAATTCTAGCAGAACGATCCC
JMFS110A08+           AAGGTTGGATTCGTTATCGACAGCTTTCCTTCCCGTCAGCAATTCTAGCAGAACGATCCC
                      ____________________________________________________________
consensus             AAGGTTGGATTCGTTATCGACAGCTTTCCTTCCCGTCAGCAATTCTAGCAGAACGATCCC
 
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JMFS059E10+           ATAGCTATACACATCTGACTTCTCCGTGAGA                             
rJMSF018E17-          ATAGCTATACACATCTGACTTCTCCGTGAGACGGGAAGTTCTTGCATACTCGGGATCAAT
JMFS110A08+           ATAGCTATACACATCTGACTTCTCCGTGAGACGGGAAGTTCTTGCATACTCGGGATCAAT
                      ____________________________________________________________
consensus             ATAGCTATACACATCTGACTTCTCCGTGAGACGGGAAGTTCTTGCATACTCGGGATCAAT
 
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rJMSF018E17-          ATAACCAATAGTTCCCATTACGT                                     
JMFS110A08+           ATAACCAATAGTTCCCATTACGTAGGTCGAAGTAAAGGACTTGGATGTGCATAAGCTCTT
                      ____________________________________________________________
consensus             ATAACCAATAGTTCCCATTACGTAGGTCGAAGTAAAGGACTTGGATGTGCATAAGCTCTT
 
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JMFS110A08+           TGCAATTCCAAAGTCGGTGAGATGAGGCTCGAAATCGTTGTCCAACAAAATATTCGATGA
                      ____________________________________________________________
consensus             TGCAATTCCAAAGTCGGTGAGATGAGGCTCGAAATCGTTGTCCAACAAAATATTCGATGA