Contig 007641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS091A05Sequence626007641 (2)ref|XP_010318875.1|2e-46PREDICTED: putative ATP-dependent helicase HRQ1 isoform X3 [Solanum lycopersicu
JMFS127B01Sequence626007641 (2)ref|XP_010318875.1|1e-48PREDICTED: putative ATP-dependent helicase HRQ1 isoform X3 [Solanum lycopersicu

Alignment

This contig is upended


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JMFS127B01+                                   AAAACCTGAGGACAGAGGTCAGAGAGATGCTCAACA
                      ____________________________________________________________
consensus                                     AAAACCTGAGGACAGAGGTCAGAGAGATGCTCAACA
 
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JMFS127B01+           TCTGTTATACTGGCTCGAAATCCAAATTTACCAAGTTGATCAAGTGCTTGCTTCAGAGAA
                      ____________________________________________________________
consensus             TCTGTTATACTGGCTCGAAATCCAAATTTACCAAGTTGATCAAGTGCTTGCTTCAGAGAA
 
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JMFS127B01+           CACAAGGTAACTTTTCCATGCTGAAGTTGAATAACAGCAGAATATATATTTATGAAAGAA
JMFS091A05+                                             CAGCAGAATATATATTTATGAAAGAA
                      ____________________________________________________________
consensus             CACAAGGTAACTTTTCCATGCTGAAGTTGAATAACAGCAGAATATATATTTATGAAAGAA
 
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JMFS127B01+           AATAATTTCATTTTACTTTTCAACCATGATGGGCACAAGCACAAATTGCTTTTTGTTGAC
JMFS091A05+           AATAATTTCATTTTACTTTTCAACCATGATGGGCACAAGCACAAATTGCTTTTTGTTGAC
                      ____________________________________________________________
consensus             AATAATTTCATTTTACTTTTCAACCATGATGGGCACAAGCACAAATTGCTTTTTGTTGAC
 
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JMFS127B01+           CGCGGGTTCATCTCAGTGTTCTGTCTGCGAGCTTCATTACATATGCAGTTCCCTGAACTT
JMFS091A05+           CGCGGATTCATCTCAGTGTTCTGTCTGCGAGCTTCATTACATATGCAGTTCCCTGAACTT
                      ____________________________________________________________
consensus             CGCGGGTTCATCTCAGTGTTCTGTCTGCGAGCTTCATTACATATGCAGTTCCCTGAACTT
 
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JMFS127B01+           GGATCAAATAAGCAATTAACTGAATCTAAAACCATGACAAATTTAGATGCCTGTTCGTCT
JMFS091A05+           GGATCAAATAAGCAATTAACTGAATCTAAAACCATGACAAATTTAGATGCCTGTTCGTCT
                      ____________________________________________________________
consensus             GGATCAAATAAGCAATTAACTGAATCTAAAACCATGACAAATTTAGATGCCTGTTCGTCT
 
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JMFS127B01+           ATACTACTGCTAGGTGACTGCAGTATGTCAAATATGAGCTCATCTGTAGGTTGTTCTGTC
JMFS091A05+           ATACTACTGCTAGGTGACTGCAGTATGTCAAATATGAGCTCATCTGTAGGTTGTTCTGTC
                      ____________________________________________________________
consensus             ATACTACTGCTAGGTGACTGCAGTATGTCAAATATGAGCTCATCTGTAGGTTGTTCTGTC
 
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JMFS127B01+           TTATTAGATACAGATTTTAACTTGCGTTTTCTCTGTGAAGTACCACTGGAAGAAACATTG
JMFS091A05+           TTATTAGATACAGATTTTAACTTGCGTTTTCTCTGTGAAGTACCACTGGAAGAAACATTG
                      ____________________________________________________________
consensus             TTATTAGATACAGATTTTAACTTGCGTTTTCTCTGTGAAGTACCACTGGAAGAAACATTG
 
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JMFS127B01+           ACATTTTGTGCTTGTCTATTTTCAGAATTAACTGACTCTAACTCAATATCGTTTTGAGTT
JMFS091A05+           ACATTTTGTGCTTGTCTATTTTCAGAATTAACTGACTCTAACTCAATATCGTTTTGAGTT
                      ____________________________________________________________
consensus             ACATTTTGTGCTTGTCTATTTTCAGAATTAACTGACTCTAACTCAATATCGTTTTGAGTT
 
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JMFS127B01+           TTATTGCTAATTGTGCTGCGCAAAACTGATAGGTCTTCCACCACATCACGCCACGTTGAC
JMFS091A05+           TTATTGCTAATTGTGCTGCGCAAAACTGATAGGTCTTCCACCACATCACGCCACGTTGAC
                      ____________________________________________________________
consensus             TTATTGCTAATTGTGCTGCGCAAAACTGATAGGTCTTCCACCACATCACGCCACGTTGAC
 
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JMFS127B01+           TCAGATTGTTTTGAAGTTGCAAATCTTGTCATAGCTGGGGATGTAGCAGA          
JMFS091A05+           TCAGATTGTTTTGAAGTTGCAAATCTTGTCATAGCTGGGGATGTAGCAGATTGCTCAGTC
                      ____________________________________________________________
consensus             TCAGATTGTTTTGAAGTTGCAAATCTTGTCATAGCTGGGGATGTAGCAGATTGCTCAGTC
 
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JMFS091A05+           TGCTGTCTATCCTTCTTTGCAAAAGGAACAAGAACCAAAAAATCACCATCACCAATTGAA
                      ____________________________________________________________
consensus             TGCTGTCTATCCTTCTTTGCAAAAGGAACAAGAACCAAAAAATCACCATCACCAATTGAA
 
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JMFS091A05+           TAGCTGCCTAGCTTATTCTCTACTGCCATTTTCATCCCCTAATCCAAACAATGCAAGGGA
                      ____________________________________________________________
consensus             TAGCTGCCTAGCTTATTCTCTACTGCCATTTTCATCCCCTAATCCAAACAATGCAAGGGA