Contig 007607:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012G10Sequence580000110 (4)716007607 (4)ref|XP_009784461.1|5e-85PREDICTED: protein EIN4-like [Nicotiana sylvestris]
JMFF020N09Sequence509000110 (4)681007607 (4)ref|XP_009784461.1|2e-77PREDICTED: protein EIN4-like [Nicotiana sylvestris]
JMFS050C09Sequence233007607 (4)
JMSF026A10Sequence670000110 (4)708007607 (4)ref|XP_009784461.1|3e-83PREDICTED: protein EIN4-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026A10+ TCTCGGGGCCGTGGACAAGNCATGNCGCTGA
rJMFF012G10+ GTGGACAAGGCATGACGCTGA
                      ____________________________________________________________
consensus TCTCGGGGCCGTGGACAAGGCATGACGCTGA
 
. : . : . : . : . : . :
rJMSF026A10+ TTCTAAGATACCAGAAGCAATCCTCGATTAGAAGACGAATCTTTGAATATAGAAATCCTT
rJMFF020N09+ GATACCAGAAGCAATCCTNGATTAGAAGACGAATCTTTGAATATAGAAATCCTT
rJMFF012G10+ TTCTAAGATACCAGAAGCAATCCTCGATTAGAAGACGAATCTTTGAATATAGAAATCCTT
                      ____________________________________________________________
consensus TTCTAAGATACCAGAAGCAATCCTCGATTAGAAGACGAATCTTTGAATATAGAAATCCTT
 
. : . : . : . : . : . :
rJMSF026A10+ CCGAGCCACCGCTTCCAAGCTCAATGTTCGAAGGCCTTCAAGTTCTTCTAGCCGACGATG
rJMFF020N09+ CCGAGCCACNGCTTCCAAGCTCAATGTTCGAAGGCCTTCAAGTTCTTCTAGCCGACGATG
rJMFF012G10+ CCGAGCCACCGCTTCCAAGCTCAATGTTCGAAGGCCTTCAAGTTCTTCTAGCCGACGATG
                      ____________________________________________________________
consensus CCGAGCCACCGCTTCCAAGCTCAATGTTCGAAGGCCTTCAAGTTCTTCTAGCCGACGATG
 
. : . : . : . : . : . :
rJMSF026A10+ ACGGTGTGAATAGAATGGTGACTAAAAAGCTGCTCGAGAAGTTACGCTGCCAAGTATCCA
rJMFF020N09+ ACGGTGTGAATAGAATGGTGACTAAAAAGCTGCTCGAGAAGTTACGCTGCCAAGTATCCA
rJMFF012G10+ ACGGTGTGAATAGAATGGTGACTAAAAAGCTGCTCGAGAAGTTACGCTGCCAAGTATCCA
                      ____________________________________________________________
consensus ACGGTGTGAATAGAATGGTGACTAAAAAGCTGCTCGAGAAGTTACGCTGCCAAGTATCCA
 
. : . : . : . : . : . :
rJMSF026A10+ CGGTTTCAACGGGTTTCGAATGCCTAAGCGCCCTAGGCCCCTCGGCAACTTCCTACCAAG
rJMFF020N09+ CGGTTTCAACGGGTTTCGAATGCCTAAGCGCCCTAGGCCCCTCGGCAACTTCCTACCAAG
rJMFF012G10+ CGGTTTCAACGGGTTTCGAATGCCTAAGCGCCCTAGGCCCCTCGGCAACTTCCTACCAAG
                      ____________________________________________________________
consensus CGGTTTCAACGGGTTTCGAATGCCTAAGCGCCCTAGGCCCCTCGGCAACTTCCTACCAAG
 
. : . : . : . : . : . :
rJMSF026A10+ TCATCATCCTAGACCTTCACATGCCCGAAATGGACGGGTTNGAAGTGGCGATGAGAGTGC
rJMFF020N09+ TCATCATCCTAGACCTTCACATGCCCGAAATGGACGGGTTCGAAGTGGCGATGAGAGTGC
rJMFF012G10+ TCATCATCCTAGACCTTCACATGCCCGAAATGGACGGGTTCGAAGTGGCGATGAGAGTGC
                      ____________________________________________________________
consensus TCATCATCCTAGACCTTCACATGCCCGAAATGGACGGGTTCGAAGTGGCGATGAGAGTGC
 
. : . : . : . : . : . :
rJMSF026A10+ GCAAGTTTCGGAGTCGCAACTGGCCGTTGATCATAGCCGTGACCGCGAGCTCGGAAGACC
rJMFF020N09+ GCAAGTTTCGGAGTCGCAACTGGCCGTTGATCATAGCCGTGACCGCGAGCTCGGAAGACC
rJMFF012G10+ GCAAGTTTCGGAGTCGCAACTGGCCGTTGATCATAGCCGTGACCGCGAGCTCGGAAGACC
                      ____________________________________________________________
consensus GCAAGTTTCGGAGTCGCAACTGGCCGTTGATCATAGCCGTGACCGCGAGCTCGGAAGACC
 
. : . : . : . : . : . :
rJMSF026A10+ ATATGTGGGAAAGATGCCTCCAGGTGGGGATGAATGGTCTGATACGAAAACCCGTCCTCC
rJMFF020N09+ ATATGTGGGAAAGATGCCTCCAGGTGGGGATGAATGGTCTGATACGAAAACCCGTCCTCC
rJMFF012G10+ ATATGTGGGAAAGATGCCTCCAGGTGGGGATGAATGGTCTGATACGAAAACCCGTCCTCC
                      ____________________________________________________________
consensus ATATGTGGGAAAGATGCCTCCAGGTGGGGATGAATGGTCTGATACGAAAACCCGTCCTCC
 
. : . : . : . : . : . :
rJMSF026A10+ TACAGAGACTTGCGGAAGAACTTCAGAGAGTCCTCCAGCGGGCTGGCAACGAAGTCATGT
rJMFF020N09+ TACAGAGACTTGCGGAAGAACTTCAGAGAGTCCTCCAGCGGGCTGGCAACGAAGTCATGT
rJMFF012G10+ TACAGAGACTTGCGGAAGAACTTCAGAGAGTCCTCCAGCGGGCTGGCAACGAAGTCATGT
                      ____________________________________________________________
consensus TACAGAGACTTGCGGAAGAACTTCAGAGAGTCCTCCAGCGGGCTGGCAACGAAGTCATGT
 
. : . : . : . : . : . :
rJMSF026A10+ GAAAAGCTCGAGAGAGTAACGGCTGCCCGCCCCCCGGATCTTGAAAAGCTTGAGAATAAT
rJMFF020N09+ GAAAAGCTCGAGAGAGTAACGGCTGCCCGCCCCCCGGATCTTGAAAAGCTTGAGAATAAT
rJMFF012G10+ GAAAAGCTCGAGAGAGTAACGGCTGCCCGCCCCCCGGATCTTGAAAAGCTTGAGAATAAT
JMFS050C09- GAGAGAGAAACGGCTGCCCGCCCCCCGGATCTTGAAAAGCTTGAGAATAAT
                      ____________________________________________________________
consensus GAAAAGCTCGAGAGAGTAACGGCTGCCCGCCCCCCGGATCTTGAAAAGCTTGAGAATAAT
 
. : . : . : . : . : . :
rJMSF026A10+ GGCGGCCCGTGGATCTTCATCTCCATAGACAATCCTAGCTTGTTCTTGCTAACTGCATAG
rJMFF020N09+ GGCGGCCCGTGGATCTTCATCTCCATAGACAATCCTAGCTTGTTCTTGCTAACTGCATAG
rJMFF012G10+ GGCGGCCCGTGGATCTTCATCTCCATAGACAATCCTAGCTTGTTCTTGCTAACTGCATAG
JMFS050C09- GGCGGCCCGTGGATCTTCATCTCCATAGACAATCCTAGCTTGTTCTTGCTAACTGCATAG
                      ____________________________________________________________
consensus GGCGGCCCGTGGATCTTCATCTCCATAGACAATCCTAGCTTGTTCTTGCTAACTGCATAG
 
. : . : . : . : . : . :
rJMSF026A10+ TTGGTGAAGTCCTCTGTATACATATATCTATATATTATAGGGAATAGGATTGCCANATCC
rJMFF020N09+ TTGGTGAAGTCCTCTGTATACATATATCTATATATTATAGGGAATAGGATTGCCATATCC
rJMFF012G10+ TTGGTGAAGTCCTCTGTATACATATATCTATATATTATAGGGAATAGGATTGCCATATCC
JMFS050C09- TTGGTGAAGTCCTCTGTATACATATATCTATATATTATAGGGAATAGGATTGCCATATCC
                      ____________________________________________________________
consensus TTGGTGAAGTCCTCTGTATACATATATCTATATATTATAGGGAATAGGATTGCCATATCC
 
. : . : . : . : . : . :
rJMSF026A10+ AGATGGTCTCTGTAAGG
rJMFF020N09+ AGATGGTCTCTGTAAGGTTTACTTCCC
rJMFF012G10+ AGATGGTCTCTGTAAGGTTTACTTCCCTTAGTGGC
JMFS050C09- AGATGGTCTCTGTAAGGTTTACTTCCCTTAGTGGCATGGTTCTTTGAAAAATGGAAAGAG
                      ____________________________________________________________
consensus AGATGGTCTCTGTAAGGTTTACTTCCCTTAGTGGCATGGTTCTTTGAAAAATGGAAAGAG