Contig 007571:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS007F08Sequence622007571 (3)ref|XP_011088827.1|7e-73PREDICTED: AP-2 complex subunit alpha-1-like [Sesamum indicum]
JMFS046E09Sequence636007571 (3)ref|XP_011088827.1|4e-85PREDICTED: AP-2 complex subunit alpha-1-like [Sesamum indicum]
JMSF018C09Sequence216007571 (3)716016079ref|XP_009769671.1|2e-30PREDICTED: AP-2 complex subunit alpha-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS046E09+                                                           ATGTTTCCAACC
                      ____________________________________________________________
consensus                                                             ATGTTTCCAACC
 
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JMFS046E09+           AATGTTAGTGCTAGACACTGAAATGTCTCATTGCGTCCAATTATGTCATTCCGCACAGTA
JMFS007F08+                                                 AATTATGTCATTCCGCACAGTA
                      ____________________________________________________________
consensus             AATGTTAGTGCTAGACACTGAAATGTCTCATTGCGTCCAATTATGTCATTCCGCACAGTA
 
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JMFS046E09+           TTAATTGCTAATCGCAAGAAGTCATGATTCTCATTGAGCAAACATGATGTGACTATGTAA
JMFS007F08+           TTAATTGCTAATCGCAAGAAGTCATGATTCTCATTGAGCAAACATGATGTGACTATGTAA
                      ____________________________________________________________
consensus             TTAATTGCTAATCGCAAGAAGTCATGATTCTCATTGAGCAAACATGATGTGACTATGTAA
 
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JMFS046E09+           CCAACCTGCTTCTCAGGATACTTCGGAGCAGATATTAGAGAAACAGCTTCCATATGACCA
JMFS007F08+           CCAACCTGCTTCTCAGGATACTTCGGAGCAGATATTAGAGAAACAGCTTCCATATGACCA
                      ____________________________________________________________
consensus             CCAACCTGCTTCTCAGGATACTTCGGAGCAGATATTAGAGAAACAGCTTCCATATGACCA
 
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JMFS046E09+           AAATCCACATCATAACCAAGCATAAATATGTAAAGCATTTTCCAAACATATTTCTTTTTC
JMFS007F08+           AAATCCACATCATAACCAAGCATAAATATGTAAAGCATTTTCCAAACATATTTCTTTTTC
                      ____________________________________________________________
consensus             AAATCCACATCATAACCAAGCATAAATATGTAAAGCATTTTCCAAACATATTTCTTTTTC
 
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JMFS046E09+           TCATAAGGTGTCAAACCCTTTTCGTTCTTGAATCGAGTACGGATATTCCCGAGCTCCTTG
JMFS007F08+           TCATAAGGTGTCAAACCCTTTTCGTTCTTGAATCGAGTACGGATATTCCCGAGCTCCTTG
                      ____________________________________________________________
consensus             TCATAAGGTGTCAAACCCTTTTCGTTCTTGAATCGAGTACGGATATTCCCGAGCTCCTTG
 
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JMFS046E09+           TCGACGCGGAGACGCTCCTGCTCTTTGTTCTGGCAATTGCGAATGTCGCTTATGAACACC
JMFS007F08+           TCGACGCGGAGACGCTCCTGCTCTTTGTTCTGGCAATTGCGAATGTCGCTTATGAACACC
                      ____________________________________________________________
consensus             TCGACGCGGAGACGCTCCTGCTCTTTGTTCTGGCAATTGCGAATGTCGCTTATGAACACC
 
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JMFS046E09+           GACAGACCCCTCATGCCAGACAACGCCATCTCCCCCGGACGCTCAGATCCGATCCAGCTC
JMFS007F08+           GACAGACCCCTCATGCCAGACAACGCCATCTCCCCCGGACGCTCAGATCCGATCCAGCTC
                      ____________________________________________________________
consensus             GACAGACCCCTCATGCCAGACAACGCCATCTCCCCCGGACGCTCAGATCCGATCCAGCTC
 
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JMFS046E09+           AGAGGCGGCTCCCAATTTCTTCTCGATCCAACGTTTCCACAAAGGTCTTCCCTTCAAAGA
JMSF018C09+                            TCTTCTCGATCCAACGTTTCCACAAAGGTCTTCCCTTCAAAGA
JMFS007F08+           AGAGGCGGCTCCCAATTTCTTCTCGATCCAACGTTTCCACAAAGGTCTTCCCTTCAAAGA
                      ____________________________________________________________
consensus             AGAGGCGGCTCCCAATTTCTTCTCGATCCAACGTTTCCACAAAGGTCTTCCCTTCAAAGA
 
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JMFS046E09+           TCGAGCCTCCAAACTCACATAAAAATGCGCTTCTGTCAATTCGTCTCCCAGTGTAAAAAC
JMSF018C09+           TCGAGCCTCCAAACTCACATAAAAATGCGCTTCTGTCAATTCGTCTCCCAGTGTAAAAAC
JMFS007F08+           TCGAGCCTCCAAACTCACATAAAAATGCGCTTCTGTCAATTCGTCTCCCAGTGTAAAAAC
                      ____________________________________________________________
consensus             TCGAGCCTCCAAACTCACATAAAAATGCGCTTCTGTCAATTCGTCTCCCAGTGTAAAAAC
 
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JMFS046E09+           GCGCGTATGTATCTTCTGTATGGATAGATAGAGAGAGAAAAGAAGAGGGAATAGAGAAAG
JMSF018C09+           GCGCGTATGTATCTTCTGTATGGATAGATAGAGAGAGAAAAGAAGAGGGAATAGAGAAAG
JMFS007F08+           GCGCGTATGTATCTTCTGTATGGATAGATAGAGAGAGAAAAGAAGAGGGAATAGAGAAAG
                      ____________________________________________________________
consensus             GCGCGTATGTATCTTCTGTATGGATAGATAGAGAGAGAAAAGAAGAGGGAATAGAGAAAG
 
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JMFS046E09+           TGTATTGTGATCTAGAGAGAGAAA                                    
JMSF018C09+           TGTATTGTGATCTAGAGAGAGAAAGGTGGACTGAGAAAAATTGGAGCAGCC         
JMFS007F08+           TGTATTGTGATCTAGAGAGAGAAAGGTGGACTGAGAAAAATTGGAGCAGCCGTCGGGCCA
                      ____________________________________________________________
consensus             TGTATTGTGATCTAGAGAGAGAAAGGTGGACTGAGAAAAATTGGAGCAGCCGTCGGGCCA