Contig 007548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN038J11Sequence528007548 (3)ref|XP_002270756.1|3e-55PREDICTED: vesicle transport protein SFT2B [Vitis vinifera] emb|CBI27704.3| unna
JMSF021C13Sequence701011994 (2)ref|XP_006357937.1|9e-23PREDICTED: vesicle transport protein SFT2B-like isoform X2 [Solanum tuberosum]781007548 (3)emb|CDP20041.1|5e-06unnamed protein product [Coffea canephora]
JMSF023P18Sequence641011994 (2)ref|XP_006357937.1|6e-23PREDICTED: vesicle transport protein SFT2B-like isoform X2 [Solanum tuberosum]773007548 (3)emb|CDP20041.1|5e-06unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF021C13+                                   CTATATGTGCGGAACAAGCTACTTACACTTTTGGC
rJMSF023P18+                                           GCGGAACAAGCTACTTACAC-TTTGGC
                      ____________________________________________________________
consensus                                      CTATATGTGCGGAACAAGCTACTTACACTTTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021C13+          AATTTTATTGGAGTTTGGTGCTCTTATTTGGTATGTCAGTAAGCTCTCATGTCTCTTTAT
rJMSF023P18+          AATTTTATTGGAGTTTGGTGCTCTTATTTGGTATGTCAGTAAGCTCTCATGTCTCTTTAT
                      ____________________________________________________________
consensus             AATTTTATTGGAGTTTGGTGCTCTTATTTGGTATGTCAGTAAGCTCTCATGTCTCTTTAT
 
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rJMSF021C13+          TTCTTCAGACTGATTAACCTGCACTCTCTAATAGTTTGAGTTGGGAAGACAGAGTGCAGC
rJMSF023P18+          TTCTTCAGACTGATTAACCTGCACTCTCTAATAGTTTGAGTTGGGAAGACAGAGTGCAGC
                      ____________________________________________________________
consensus             TTCTTCAGACTGATTAACCTGCACTCTCTAATAGTTTGAGTTGGGAAGACAGAGTGCAGC
 
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rJMSF021C13+          AGGATTTTCTAGTTTGTGACCACTCTAAAACCAAAAAATATACTGCATTCCACATCTCAC
rJMSF023P18+          AGGATTTTCTAGTTTGTGACCACTCTAAAACCAAAAAATATACTGCATTCCACATCTCAC
                      ____________________________________________________________
consensus             AGGATTTTCTAGTTTGTGACCACTCTAAAACCAAAAAATATACTGCATTCCACATCTCAC
 
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rJMSF021C13+          TAAGTATGGTGAAATCCAAAGTGAATCTTCATTGCTTTTGAAGTCCCCACATCTGTTGAT
rJMSF023P18+          TAAGTATGGTGAAATCCAAAGTGAATCTTCATTGCTTTTGAAGTCCCCACATCTGTTGAT
                      ____________________________________________________________
consensus             TAAGTATGGTGAAATCCAAAGTGAATCTTCATTGCTTTTGAAGTCCCCACATCTGTTGAT
 
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rJMSF021C13+          CATTGGAATGCTAATTGCCTTAAGTCAATGTTAGCACAATTGCCAACAAAGTTGGTCAAG
rJMSF023P18+          CATTGGAATGCTAATTGCCTTAAGTCAATGTTAGCACAATTGCCAACAAAGTTGGTCAAG
                      ____________________________________________________________
consensus             CATTGGAATGCTAATTGCCTTAAGTCAATGTTAGCACAATTGCCAACAAAGTTGGTCAAG
 
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rJMSF021C13+          TCTCACATAGCTACATCAGCTAGGTTCATAGGATATTTAGTAATGATTACTGAAAGTCTT
rJMSF023P18+          TCTCACATAGCTACATCAGCTAGGTTCATAGGATATTTAGTAATGATTACTGAAAGTCTT
                      ____________________________________________________________
consensus             TCTCACATAGCTACATCAGCTAGGTTCATAGGATATTTAGTAATGATTACTGAAAGTCTT
 
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rJMSF021C13+          GCTCATTTGTTATATACTAAACTAGATTTCTTTGATAGATTTTGCCACACATTGCTGTTT
rJMSF023P18+          GCTCATTTGTTATATACTAAACTAGATTTCTTTGATAGATTTTGCCACACATTGCTGTTT
                      ____________________________________________________________
consensus             GCTCATTTGTTATATACTAAACTAGATTTCTTTGATAGATTTTGCCACACATTGCTGTTT
 
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rJMSF021C13+          TTAGCTGAGAATCTTGTTTGCTTCTGTAATTTCAACAGGTATAGCTTGAGTTACATCCCA
rJMSF023P18+          TTAGCTGAGAATCTTGTTTGCTTCTGTAATTTCAACAGGTATAGCTTGAGTTACATCCCA
JMFN038J11-                                                GGTATAGCTTGAGTTACATCCCA
                      ____________________________________________________________
consensus             TTAGCTGAGAATCTTGTTTGCTTCTGTAATTTCAACAGGTATAGCTTGAGTTACATCCCA
 
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rJMSF021C13+          TTTGCAAGGTCCATGGTCTCAAAAGTTATGGTTGCTTGCTTTGATACCGAATTCTAAGTG
rJMSF023P18+          TTTGCAAGGTCCATGGTCTCAAAAGTTATGGTTGCTTGCTTTGATACCGAATTCTAAGTG
JMFN038J11-           TTTGCAAGGTCCATGGTCTCAAAAGTTATGGTTGCTTGCTTTGATACCGAATTCTAAGTG
                      ____________________________________________________________
consensus             TTTGCAAGGTCCATGGTCTCAAAAGTTATGGTTGCTTGCTTTGATACCGAATTCTAAGTG
 
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rJMSF021C13+          GCATACTCATGAGAGGGGTTCAGATTTGCAATTTCTGTATAGTAGCATGAATCTCATACA
rJMSF023P18+          GCATACTCATGAGAGGGGTTCAGATTTGCAATTTCTGTATAGTAGCATGAATCTCATACA
JMFN038J11-           GCATACTCATGAGAGGGGTTCAGATTTGCAATTTCTGTATAGTAGCATGAATCTCATACA
                      ____________________________________________________________
consensus             GCATACTCATGAGAGGGGTTCAGATTTGCAATTTCTGTATAGTAGCATGAATCTCATACA
 
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rJMSF021C13+          TGACAAAACCTGGTGTTCTGATCCAGAGATCGGGTTAGGTGAGTGCACCACCTGTGTGTA
rJMSF023P18+          TGACAAAACCTGGTGTTCTGATCCAGAGATCGGGTTAGGTGAGTGCACCACCTGTGTGTA
JMFN038J11-           TGACAAAACCTGGTGTTCTGATCCAGAGATCGGGTTAGGTGAGTGCACCACCTGTGTGTA
                      ____________________________________________________________
consensus             TGACAAAACCTGGTGTTCTGATCCAGAGATCGGGTTAGGTGAGTGCACCACCTGTGTGTA
 
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rJMSF021C13+          ACTAACTAGTTACAATCATTTTGACTGGACCAACTGCTGGTGCCTATCAACGCTTTTTCT
rJMSF023P18+          ACTAACTAGTTACAATCATTTTGACTGGACCAACTGCTGGTGCCTATCAACGCTTTTTCT
JMFN038J11-           ACTAACTAGTTACAATCATTTTGACTGGACCAACTGCTGGTGCCTATCAACGCTTTTTCT
                      ____________________________________________________________
consensus             ACTAACTAGTTACAATCATTTTGACTGGACCAACTGCTGGTGCCTATCAACGCTTTTTCT
 
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rJMSF021C13+          TTCTGCTAC                                                   
rJMSF023P18+          TTCTGCTAC                                                   
JMFN038J11-           TTCTGCTACGTTGTGCTAGGGATTTGTTTACCCTTGTTAACAAGTGTTATTATCTCTTNC
                      ____________________________________________________________
consensus             TTCTGCTACGTTGTGCTAGGGATTTGTTTACCCTTGTTAACAAGTGTTATTATCTCTTNC