Contig 007529:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B20Sequence644007529 (5)ref|XP_009593760.1|9e-119PREDICTED: ras-related protein YPT3 [Nicotiana tomentosiformis]233007529 (5)
JMFN019I05Sequence633007529 (5)ref|XP_003596706.1|3e-111Ras-related protein Rab-11A [Medicago truncatula] gb|AES66957.1| RAB GTPase-like
JMSF018B21Sequence478007529 (5)ref|XP_010102122.1|1e-81Ras-related protein Rab11D [Morus notabilis] gb|EXB92372.1| Ras-related protein 797007529 (5)ref|XP_009593760.1|3e-125PREDICTED: ras-related protein YPT3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF047B20- AATTGCCATATTAATGAAATCTATAACCTGTCTGGCTGTCTTGAAAGCTA
                      ____________________________________________________________
consensus AATTGCCATATTAATGAAATCTATAACCTGTCTGGCTGTCTTGAAAGCTA
 
. : . : . : . : . : . :
rJMFF047B20- TTGGCAAAAGGAACAAATGGCCTATATTTTGAAAAATTTCCGCGAAAGTGCTTCTTAACA
rJMSF018B21- GTGCTTCTTAGCA
                      ____________________________________________________________
consensus TTGGCAAAAGGAACAAATGGCCTATATTTTGAAAAATTTCCGCGAAAGTGCTTCTTAGCA
 
. : . : . : . : . : . :
rJMFF047B20- CGACTCTCATGGCTACCTTAATGGTCACGCCTTCCCACAAACAAAAGAAACCCAAAACCC
rJMSF018B21- CGACTCTCATGGCTACCTTAATGTTCACGCCTTCCCACAAACAAAAGAAACCCAAAACCC
                      ____________________________________________________________
consensus CGACTCTCATGGCTACCTTAATGTTCACGCCTTCCCACAAACAAAAGAAACCCAAAACCC
 
. : . : . : . : . : . :
rJMFF047B20- AAACGTAAAATCATCGATTTAATGATAATGTACAGGAAAATGGTGCAACAGGTTCATTTA
rJMSF018B21- AAACGTAAAATCATCGATTTAATGATAATGTACAGGAAGATGGTGCAGCAGGTTCATTTA
                      ____________________________________________________________
consensus AAACGTAAAATCATCGATTTAATGATAATGTACAGGAAGATGGTGCAGCAGGTTCATTTA
 
. : . : . : . : . : . :
rJMSF018B21- GCTCGAACAGCATCCACCTCGTTTCCCAGAAGACCCTTCATCTTTGACATTGATATTCTC
                      ____________________________________________________________
consensus GCTCGAACAGCATCCACCTCGTTTCCCAGAAGACCCTTCATCTTTGACATTGATATTCTC
 
. : . : . : . : . : . :
JMFF047B20+ AGCATCAATGGCCTTCTTACT
rJMSF018B21- TCCTTTAGGAGGAACAGATGAAGCGGCACCATCATCGCCAGCATCAATGGCCTTCTTACT
                      ____________________________________________________________
consensus TCCTTTAGGAGGAACAGATGAAGCGGCACCATCATCGCCAGCATCAATGGCCTTCTTACT
 
. : . : . : . : . : . :
JMFF047B20+ CATGACATGGTAGATCTGAGTGAGGACTTCGGTGAATGCGTTTTCCACATTCGTGGCTTC
rJMSF018B21- CATGACATGGTAGATCTGAGTGAGGACTTCGGTGAATGCGTTTTCCACATTCGTGGCTTC
JMFN019I05+ TTC
                      ____________________________________________________________
consensus CATGACATGGTAGATCTGAGTGAGGACTTCGGTGAATGCGTTTTCCACATTCGTGGCTTC
 
. : . : . : . : . : . :
JMFF047B20+ CAGTGCAGAGGTTTCCATGAAGTAGAGAGCTTCCGACTCCGCCAATTCCTTACCTTCCTC
rJMSF018B21- CAGTGCAGAGGTTTCCATGAAGTAGAGAGCTTCCGACTCCGCCAATTCCTTACCTTCCTC
JMFN019I05+ CAGTGCCGAAGTTTCCATGAAGTAGAGAGCCTCCCTCTCCGCAAAATTCTTGCCTTCCTC
                      ____________________________________________________________
consensus CAGTGCAGAGGTTTCCATGAAGTAGAGAGCTTCCGACTCCGCCAATTCCTTACCTTCCTC
 
. : . : . : . : . : . :
JMFF047B20+ GGTTTGAACTGCCACTAGATGCCTAAGATCCGATTTGTTGCCAATGAGCATCACTACGAT
JMSF018B21+ TTGTTGCCAATGAGCATCACTACGAT
rJMSF018B21- GGTTTGAACTGCCACTAGATGCCTAAGATCCGATTTGTTGCCAATGAGCATCACTACGAT
JMFN019I05+ GGTTGGAACCGCCACAAGATGTCGAAGATCGGACTTGTTGCCTATGAGCATTACTACGAT
                      ____________________________________________________________
consensus GGTTTGAACTGCCACTAGATGCCTAAGATCCGATTTGTTGCCAATGAGCATCACTACGAT
 
. : . : . : . : . : . :
JMFF047B20+ GTTGGGATCCGTGTGGTCTCTCAGCTCTTTCAACCACCTCGACACGTTCTCAAATGTAAC
JMSF018B21+ GTTGGGATCCGTGTGGTCTCTCAGCTCTTTCAACCACCTCGACACGTTCTCAAATGTAAC
rJMSF018B21- GTTGGGATCCGTGTGGTCTCTCAGCTCTTTCAACCACCTCGACACGTTCTCAAATGTAAC
JMFN019I05+ GTTAGGGTCGGTGTGGTCCCTCAGCTCCTTCAGCCATCTCGACACGTTCTCGAATGTAAC
                      ____________________________________________________________
consensus GTTGGGATCCGTGTGGTCTCTCAGCTCTTTCAACCACCTCGACACGTTCTCAAATGTAAC
 
. : . : . : . : . : . :
JMFF047B20+ ATGCCTAGAAACATCGTACACAAGTAAAGCGCCCACTGCTCCTCTGTAGTAAGCACTAGT
JMSF018B21+ ATGCCTAGAAACATCGTACACAAGTAAAGCGCCCACTGCTCCTCTGTAGTAAGCACTAGT
rJMSF018B21- ATGCCTAGAAACATCGTACACAAGTAAAGCGCCCACTGCTCCTCTGTAGTAAGCACTAGT
JMFN019I05+ GTGCCTAGTCACATCGTATACAAGTAATGCACCAACCGCTCCTCGGTAGTATGCACTCGT
                      ____________________________________________________________
consensus ATGCCTAGAAACATCGTACACAAGTAAAGCGCCCACTGCTCCTCTGTAGTAAGCACTAGT
 
. : . : . : . : . : . :
JMFF047B20+ AATGGCACGGTACCTTTCCTGACCGGCGGTGTCCCAAATCTGAGCTTTGATGACTTTTCC
JMSF018B21+ AATGGCACGGTACCTTTCCTGACCGGCGGTGTCCCAAATCTGAGCTTTGATGACTTTTCC
rJMSF018B21- AATGGCACGGTACCTTTCCTGACCGGCGGTGTCCCAAATCTGAGCTTTGATGACTTTTCC
JMFN019I05+ TATGGCTCGATACCTTTCTTGGCCAGCAGTGTCCCAAATCTGAGCTTTGATGACTTTGGC
                      ____________________________________________________________
consensus AATGGCACGGTACCTTTCCTGACCGGCGGTGTCCCAAATCTGAGCTTTGATGACTTTTCC
 
. : . : . : . : . : . :
JMFF047B20+ GTCGACGGTGAGGCTCTTGGTGGCGAACTCGACCCCAATAGTGGACTTGGACTCGAGATT
JMSF018B21+ GTCGACGGTGAGGCTCTTGGTGGCGAACTCGACCCCAATAGTGGACTTGGACTCGAGATT
rJMSF018B21- GTCGACGGTGAGGCTCTTGGTGGCGAACTCGACCCCAATAGTGGACTTGGACTCGAGATT
JMFN019I05+ ACCGATGGTGAGGCTCTTGGTGGCAAACTCAACCCCAATAGTGGACTTGGACTCGAGATT
                      ____________________________________________________________
consensus GTCGACGGTGAGGCTCTTGGTGGCGAACTCGACCCCAATAGTGGACTTGGACTCGAGATT
 
. : . : . : . : . : . :
JMFF047B20+ AAATTCGTTCCTGGTGAACCTGGACAGCAGATTGGATTTGCCCACTCCCGAATCTCCGAT
JMSF018B21+ AAATTCGTTCCTGGTGAACCTGGACAGCAGATTGGATTTGCCCACTCCCGAATCTCCGAT
rJMSF018B21- AAATTCGTTCCTGGTGAACCTGGACAGCAGATTGGATTTGCCCACTCCCGAATCTCCGAT
JMFN019I05+ GAACTCGTTCTTGGTGAACCTCGACAGAAGATTGGATTTTCCGACGCCGGAGTCTCCGAT
                      ____________________________________________________________
consensus AAATTCGTTCCTGGTGAACCTGGACAGCAGATTGGATTTGCCCACTCCCGAATCTCCGAT
 
. : . : . : . : . : . :
JMFF047B20+ CAGAACCAGCTTGAA
JMSF018B21+ CAGAACCAGCTTGAA
rJMSF018B21- CAGAACCAGCTTGAACAAGTAATCATACTCATCTTGTGCTCTGTAGCCAGCCATCT
JMFN019I05+ CAGGACCAGCTTGAACAGGAAATCATACTCATCATCTGCTCTGTAACCCGCCATCTTTTC
                      ____________________________________________________________
consensus CAGAACCAGCTTGAACAGGTAATCATACTCATCTTGTGCTCTGTAGCCCGCCATCTTTTC
 
. : . : . : . : . : . :
JMFN019I05+ ACTCTATGTTCTTGTAGCTAAGTAGTGGAGGATATTTTCCAGTTTGATTTTGATTTTGAT
                      ____________________________________________________________
consensus ACTCTATGTTCTTGTAGCTAAGTAGTGGAGGATATTTTCCAGTTTGATTTTGATTTTGAT
 
. : . : . : . : . : . :
JMFN019I05+ TTTGATTTTGATGTGTGTGTTTCAAGATATGGTTGAATGAGCGGAGAAATGGTGGACTGG
                      ____________________________________________________________
consensus TTTGATTTTGATGTGTGTGTTTCAAGATATGGTTGAATGAGCGGAGAAATGGTGGACTGG